miRNA display CGI


Results 21 - 40 of 392 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28261 3' -43 NC_005902.1 + 146735 0.94 0.381049
Target:  5'- cCUUUAACACCUAAGCUAUAUACaaACa -3'
miRNA:   3'- -GAAAUUGUGGAUUCGAUAUAUGggUG- -5'
28261 3' -43 NC_005902.1 + 95946 0.93 0.390188
Target:  5'- cCUUUAACACUUAAGUUAUAUACUCACu -3'
miRNA:   3'- -GAAAUUGUGGAUUCGAUAUAUGGGUG- -5'
28261 3' -43 NC_005902.1 + 140869 0.93 0.399469
Target:  5'- uCUUUAACAUCUAAGCUGUAUACUCAa -3'
miRNA:   3'- -GAAAUUGUGGAUUCGAUAUAUGGGUg -5'
28261 3' -43 NC_005902.1 + 80736 0.93 0.399469
Target:  5'- uCUUUAACACCUAAGCUAUAUACaaACa -3'
miRNA:   3'- -GAAAUUGUGGAUUCGAUAUAUGggUG- -5'
28261 3' -43 NC_005902.1 + 149202 0.93 0.399469
Target:  5'- uUUUAAUACCUAAGCUAUAUACUCAUu -3'
miRNA:   3'- gAAAUUGUGGAUUCGAUAUAUGGGUG- -5'
28261 3' -43 NC_005902.1 + 39098 0.93 0.399469
Target:  5'- uCUUUAACACCUAAGCUAUAUACaaACa -3'
miRNA:   3'- -GAAAUUGUGGAUUCGAUAUAUGggUG- -5'
28261 3' -43 NC_005902.1 + 44017 0.93 0.40889
Target:  5'- uUUUAACACCUAAGCUAUAUACaCGCa -3'
miRNA:   3'- gAAAUUGUGGAUUCGAUAUAUGgGUG- -5'
28261 3' -43 NC_005902.1 + 40969 0.93 0.428141
Target:  5'- cCUUUAAUACCUAAGCUAUAUacACUCACa -3'
miRNA:   3'- -GAAAUUGUGGAUUCGAUAUA--UGGGUG- -5'
28261 3' -43 NC_005902.1 + 128774 0.92 0.437965
Target:  5'- cCUUUAACACCUAAGCUAUAUACUUg- -3'
miRNA:   3'- -GAAAUUGUGGAUUCGAUAUAUGGGug -5'
28261 3' -43 NC_005902.1 + 146428 0.92 0.457994
Target:  5'- cCUUUAACACCUAAGCUAuaauucacUAUGCUCACu -3'
miRNA:   3'- -GAAAUUGUGGAUUCGAU--------AUAUGGGUG- -5'
28261 3' -43 NC_005902.1 + 156551 0.92 0.46819
Target:  5'- uUUUAACACCUAAGCUAUAUAUUUACu -3'
miRNA:   3'- gAAAUUGUGGAUUCGAUAUAUGGGUG- -5'
28261 3' -43 NC_005902.1 + 85057 0.92 0.46819
Target:  5'- uUUUAACAUCUAGGCUAUAUACUUACa -3'
miRNA:   3'- gAAAUUGUGGAUUCGAUAUAUGGGUG- -5'
28261 3' -43 NC_005902.1 + 169513 0.92 0.46819
Target:  5'- uCUUUAACACCUGAGCUAUAUAUCuCAg -3'
miRNA:   3'- -GAAAUUGUGGAUUCGAUAUAUGG-GUg -5'
28261 3' -43 NC_005902.1 + 51676 0.91 0.478502
Target:  5'- uUUUAACACUUAAGCUAUAUACUCAUu -3'
miRNA:   3'- gAAAUUGUGGAUUCGAUAUAUGGGUG- -5'
28261 3' -43 NC_005902.1 + 157852 0.91 0.478502
Target:  5'- aUUUAACACCUAAGCUAUAUAUuuGCu -3'
miRNA:   3'- gAAAUUGUGGAUUCGAUAUAUGggUG- -5'
28261 3' -43 NC_005902.1 + 50045 0.91 0.478502
Target:  5'- cCUUUAACACCUAAGCUAUGUucauuugcuauGCUCACu -3'
miRNA:   3'- -GAAAUUGUGGAUUCGAUAUA-----------UGGGUG- -5'
28261 3' -43 NC_005902.1 + 160882 0.91 0.478502
Target:  5'- aUUUAACcCCUAAGCUAUAUACUCACu -3'
miRNA:   3'- gAAAUUGuGGAUUCGAUAUAUGGGUG- -5'
28261 3' -43 NC_005902.1 + 157230 0.91 0.488924
Target:  5'- cCUUUAACACCUAAGCUAUAUACaaaagagCACa -3'
miRNA:   3'- -GAAAUUGUGGAUUCGAUAUAUGg------GUG- -5'
28261 3' -43 NC_005902.1 + 76087 0.91 0.510078
Target:  5'- cCUUUAAgACCUAAGCUAUAUAUUCACu -3'
miRNA:   3'- -GAAAUUgUGGAUUCGAUAUAUGGGUG- -5'
28261 3' -43 NC_005902.1 + 156433 0.9 0.520798
Target:  5'- uUUUAACACCUAAGCUAUAUACaaACa -3'
miRNA:   3'- gAAAUUGUGGAUUCGAUAUAUGggUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.