Results 1 - 20 of 392 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
28261 | 3' | -43 | NC_005902.1 | + | 105266 | 1.12 | 0.040835 |
Target: 5'- cCUUUAACACCUAAGCUAUAUACCCACu -3' miRNA: 3'- -GAAAUUGUGGAUUCGAUAUAUGGGUG- -5' |
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28261 | 3' | -43 | NC_005902.1 | + | 13184 | 1.08 | 0.071772 |
Target: 5'- cCUUUAACACCUAAGCUAUAUACCCAUu -3' miRNA: 3'- -GAAAUUGUGGAUUCGAUAUAUGGGUG- -5' |
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28261 | 3' | -43 | NC_005902.1 | + | 71605 | 1.05 | 0.098963 |
Target: 5'- cCUUUAACACCUAAGCUAUAUACUCACu -3' miRNA: 3'- -GAAAUUGUGGAUUCGAUAUAUGGGUG- -5' |
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28261 | 3' | -43 | NC_005902.1 | + | 120247 | 1.03 | 0.139577 |
Target: 5'- cCUUUAACACCUGAGCUAUAUGCUCAUg -3' miRNA: 3'- -GAAAUUGUGGAUUCGAUAUAUGGGUG- -5' |
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28261 | 3' | -43 | NC_005902.1 | + | 41984 | 1.02 | 0.147684 |
Target: 5'- gUUUAACACCUAAGCUAUAUACUCACu -3' miRNA: 3'- gAAAUUGUGGAUUCGAUAUAUGGGUG- -5' |
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28261 | 3' | -43 | NC_005902.1 | + | 99558 | 1.01 | 0.169857 |
Target: 5'- cCUUUAACACCUAAGCUAUAUACUCAUu -3' miRNA: 3'- -GAAAUUGUGGAUUCGAUAUAUGGGUG- -5' |
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28261 | 3' | -43 | NC_005902.1 | + | 143775 | 1.01 | 0.169857 |
Target: 5'- cCUUUAACACCUAAGCUAUAUACUCAUu -3' miRNA: 3'- -GAAAUUGUGGAUUCGAUAUAUGGGUG- -5' |
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28261 | 3' | -43 | NC_005902.1 | + | 23258 | 1.01 | 0.169857 |
Target: 5'- cCUUUAACACCUAAGCUAUAUAUUCACa -3' miRNA: 3'- -GAAAUUGUGGAUUCGAUAUAUGGGUG- -5' |
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28261 | 3' | -43 | NC_005902.1 | + | 184591 | 0.99 | 0.217326 |
Target: 5'- gCUUUAACACUUAAGCUAUAUACUCACu -3' miRNA: 3'- -GAAAUUGUGGAUUCGAUAUAUGGGUG- -5' |
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28261 | 3' | -43 | NC_005902.1 | + | 47185 | 0.98 | 0.235511 |
Target: 5'- cCUUUAACACUUAAGCUAUAUACUCACc -3' miRNA: 3'- -GAAAUUGUGGAUUCGAUAUAUGGGUG- -5' |
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28261 | 3' | -43 | NC_005902.1 | + | 45081 | 0.97 | 0.261724 |
Target: 5'- uUUUAACACCUAAGCUAUAUACUUACu -3' miRNA: 3'- gAAAUUGUGGAUUCGAUAUAUGGGUG- -5' |
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28261 | 3' | -43 | NC_005902.1 | + | 47237 | 0.96 | 0.297767 |
Target: 5'- cCUUUAACACCUAAGCUAUAUACaCACu -3' miRNA: 3'- -GAAAUUGUGGAUUCGAUAUAUGgGUG- -5' |
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28261 | 3' | -43 | NC_005902.1 | + | 118296 | 0.96 | 0.305422 |
Target: 5'- uUUUAACACUUAAGCUAUAUACUCACu -3' miRNA: 3'- gAAAUUGUGGAUUCGAUAUAUGGGUG- -5' |
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28261 | 3' | -43 | NC_005902.1 | + | 162391 | 0.96 | 0.305422 |
Target: 5'- cCUUUAACACCUAAGCUAcAUACUCACu -3' miRNA: 3'- -GAAAUUGUGGAUUCGAUaUAUGGGUG- -5' |
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28261 | 3' | -43 | NC_005902.1 | + | 142156 | 0.96 | 0.313228 |
Target: 5'- uCUUUAACACCUAAGCUAUAUACUUAUu -3' miRNA: 3'- -GAAAUUGUGGAUUCGAUAUAUGGGUG- -5' |
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28261 | 3' | -43 | NC_005902.1 | + | 34816 | 0.95 | 0.321183 |
Target: 5'- cCUUUAACACCUAAGUUAUAUACUCAUu -3' miRNA: 3'- -GAAAUUGUGGAUUCGAUAUAUGGGUG- -5' |
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28261 | 3' | -43 | NC_005902.1 | + | 167157 | 0.95 | 0.337544 |
Target: 5'- cCUUUAACACCUAAGCUAUAUACUUAa -3' miRNA: 3'- -GAAAUUGUGGAUUCGAUAUAUGGGUg -5' |
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28261 | 3' | -43 | NC_005902.1 | + | 145947 | 0.95 | 0.337544 |
Target: 5'- cCUUUAACAUCUAAGCUAUAUACUCAUu -3' miRNA: 3'- -GAAAUUGUGGAUUCGAUAUAUGGGUG- -5' |
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28261 | 3' | -43 | NC_005902.1 | + | 143020 | 0.95 | 0.337544 |
Target: 5'- cCUUUAACAUCUAAGCUAUAUACUCAUu -3' miRNA: 3'- -GAAAUUGUGGAUUCGAUAUAUGGGUG- -5' |
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28261 | 3' | -43 | NC_005902.1 | + | 136047 | 0.94 | 0.354503 |
Target: 5'- cCUUUAACuCCUAAGCUAUAUACUCACu -3' miRNA: 3'- -GAAAUUGuGGAUUCGAUAUAUGGGUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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