miRNA display CGI


Results 1 - 20 of 392 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28261 3' -43 NC_005902.1 + 1147 0.85 0.793687
Target:  5'- cCUUUAAgACCUAAGCUGUAUACaaACa -3'
miRNA:   3'- -GAAAUUgUGGAUUCGAUAUAUGggUG- -5'
28261 3' -43 NC_005902.1 + 1203 0.79 0.969545
Target:  5'- -gUUAACACCUAAGUUAUAUACaaAUa -3'
miRNA:   3'- gaAAUUGUGGAUUCGAUAUAUGggUG- -5'
28261 3' -43 NC_005902.1 + 1263 0.76 0.993505
Target:  5'- uCUUcAACACCUAGGCUAUAUAUaaAUg -3'
miRNA:   3'- -GAAaUUGUGGAUUCGAUAUAUGggUG- -5'
28261 3' -43 NC_005902.1 + 1412 0.74 0.998388
Target:  5'- uUUUAACcCCUAAGCUAUAUACg--- -3'
miRNA:   3'- gAAAUUGuGGAUUCGAUAUAUGggug -5'
28261 3' -43 NC_005902.1 + 1629 0.66 1
Target:  5'- -gUUAAUAUCUAAGUaAUAUACUUAUu -3'
miRNA:   3'- gaAAUUGUGGAUUCGaUAUAUGGGUG- -5'
28261 3' -43 NC_005902.1 + 1712 0.78 0.980651
Target:  5'- uCUUUAAUAUCUAAGCUAUAUuaaaccuuuuaAUCCAUa -3'
miRNA:   3'- -GAAAUUGUGGAUUCGAUAUA-----------UGGGUG- -5'
28261 3' -43 NC_005902.1 + 3024 0.9 0.553451
Target:  5'- -aUUAACAUCUAAGCUAUAUACUCAUu -3'
miRNA:   3'- gaAAUUGUGGAUUCGAUAUAUGGGUG- -5'
28261 3' -43 NC_005902.1 + 3077 0.9 0.564476
Target:  5'- aUUUAACACCUAAGCUAUAUAUaCACu -3'
miRNA:   3'- gAAAUUGUGGAUUCGAUAUAUGgGUG- -5'
28261 3' -43 NC_005902.1 + 3383 0.67 1
Target:  5'- ----uACACCUAAGCUAUAcaUACa-ACa -3'
miRNA:   3'- gaaauUGUGGAUUCGAUAU--AUGggUG- -5'
28261 3' -43 NC_005902.1 + 4612 0.84 0.822677
Target:  5'- cCUUUAACAUCUAAGCgAUAUACUUACu -3'
miRNA:   3'- -GAAAUUGUGGAUUCGaUAUAUGGGUG- -5'
28261 3' -43 NC_005902.1 + 4776 0.66 1
Target:  5'- uUUUAAC-CCUAcGCUAUAUACaaAUa -3'
miRNA:   3'- gAAAUUGuGGAUuCGAUAUAUGggUG- -5'
28261 3' -43 NC_005902.1 + 5115 0.77 0.982879
Target:  5'- uCUUUAACAUCUAAGCaAUAUAUuuGCu -3'
miRNA:   3'- -GAAAUUGUGGAUUCGaUAUAUGggUG- -5'
28261 3' -43 NC_005902.1 + 5650 0.81 0.929526
Target:  5'- cCUUUAACAaUUAAGCUAUAUACUCAUu -3'
miRNA:   3'- -GAAAUUGUgGAUUCGAUAUAUGGGUG- -5'
28261 3' -43 NC_005902.1 + 6254 0.66 1
Target:  5'- -gUUAACACCgAAGCcAUAUAUaCACu -3'
miRNA:   3'- gaAAUUGUGGaUUCGaUAUAUGgGUG- -5'
28261 3' -43 NC_005902.1 + 6315 0.7 0.99999
Target:  5'- uCUUUAAgACCUAAGCcAUAUACaaAUg -3'
miRNA:   3'- -GAAAUUgUGGAUUCGaUAUAUGggUG- -5'
28261 3' -43 NC_005902.1 + 7602 0.81 0.929526
Target:  5'- cCUUUAACACCUAAaUUAUAUACUCAUu -3'
miRNA:   3'- -GAAAUUGUGGAUUcGAUAUAUGGGUG- -5'
28261 3' -43 NC_005902.1 + 8112 0.66 1
Target:  5'- uUUUAAUAUaUAAGCUAUAUACUUg- -3'
miRNA:   3'- gAAAUUGUGgAUUCGAUAUAUGGGug -5'
28261 3' -43 NC_005902.1 + 8175 0.73 0.999442
Target:  5'- --cUAACAUUUAAGCUAUAUACUUg- -3'
miRNA:   3'- gaaAUUGUGGAUUCGAUAUAUGGGug -5'
28261 3' -43 NC_005902.1 + 8417 0.71 0.99993
Target:  5'- uUUUAACACCUAAaCUAUAUACaaAUg -3'
miRNA:   3'- gAAAUUGUGGAUUcGAUAUAUGggUG- -5'
28261 3' -43 NC_005902.1 + 8697 0.69 0.999998
Target:  5'- -gUUAACACUUAuGCUAUAUACaaAUa -3'
miRNA:   3'- gaAAUUGUGGAUuCGAUAUAUGggUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.