miRNA display CGI


Results 1 - 20 of 392 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28261 3' -43 NC_005902.1 + 184863 0.86 0.720457
Target:  5'- cCUUUAACACCUAAGCUGUAUAUaUGCu -3'
miRNA:   3'- -GAAAUUGUGGAUUCGAUAUAUGgGUG- -5'
28261 3' -43 NC_005902.1 + 184752 0.84 0.803541
Target:  5'- --cUAACACCUGAGCUAuaUAUACUCAUu -3'
miRNA:   3'- gaaAUUGUGGAUUCGAU--AUAUGGGUG- -5'
28261 3' -43 NC_005902.1 + 184591 0.99 0.217326
Target:  5'- gCUUUAACACUUAAGCUAUAUACUCACu -3'
miRNA:   3'- -GAAAUUGUGGAUUCGAUAUAUGGGUG- -5'
28261 3' -43 NC_005902.1 + 183499 0.66 1
Target:  5'- ----uGCAUCcAAGCUAgauUACCUACa -3'
miRNA:   3'- gaaauUGUGGaUUCGAUau-AUGGGUG- -5'
28261 3' -43 NC_005902.1 + 182935 0.86 0.73129
Target:  5'- uUUUAACACCUAAGCUAUAUAUgaACa -3'
miRNA:   3'- gAAAUUGUGGAUUCGAUAUAUGggUG- -5'
28261 3' -43 NC_005902.1 + 182566 0.86 0.720457
Target:  5'- uUUUAACACCUAAGCUAUAUACaaAUg -3'
miRNA:   3'- gAAAUUGUGGAUUCGAUAUAUGggUG- -5'
28261 3' -43 NC_005902.1 + 181228 0.82 0.904394
Target:  5'- cCUUUAACuCCUAAGUUAUAUACUUGCu -3'
miRNA:   3'- -GAAAUUGuGGAUUCGAUAUAUGGGUG- -5'
28261 3' -43 NC_005902.1 + 180885 0.67 1
Target:  5'- cCUUUAACAUCUAAGCaAUA---UCACa -3'
miRNA:   3'- -GAAAUUGUGGAUUCGaUAUaugGGUG- -5'
28261 3' -43 NC_005902.1 + 180829 0.87 0.676335
Target:  5'- --cUAACACCUAAGCgAUAUACUCACu -3'
miRNA:   3'- gaaAUUGUGGAUUCGaUAUAUGGGUG- -5'
28261 3' -43 NC_005902.1 + 180622 0.77 0.988411
Target:  5'- uCUUUAACACCUAAGCUuAUAUGaaCAa -3'
miRNA:   3'- -GAAAUUGUGGAUUCGA-UAUAUggGUg -5'
28261 3' -43 NC_005902.1 + 180352 0.78 0.975556
Target:  5'- uCUUUAACcCCUAAGCUAUAUACaaAUa -3'
miRNA:   3'- -GAAAUUGuGGAUUCGAUAUAUGggUG- -5'
28261 3' -43 NC_005902.1 + 179812 0.86 0.752632
Target:  5'- cCUUUAACAaCUAAGCUAUAUACUCAUu -3'
miRNA:   3'- -GAAAUUGUgGAUUCGAUAUAUGGGUG- -5'
28261 3' -43 NC_005902.1 + 179697 0.78 0.978214
Target:  5'- cCUUUAAaACCUAAGCUAuaUAUACUCAUu -3'
miRNA:   3'- -GAAAUUgUGGAUUCGAU--AUAUGGGUG- -5'
28261 3' -43 NC_005902.1 + 179474 0.78 0.97267
Target:  5'- -gUUAACACCUAAGUuauuuaUAUAUACUCAUu -3'
miRNA:   3'- gaAAUUGUGGAUUCG------AUAUAUGGGUG- -5'
28261 3' -43 NC_005902.1 + 178798 0.71 0.999876
Target:  5'- --gUAGCACCUGAuaUuuuUAUACCUACu -3'
miRNA:   3'- gaaAUUGUGGAUUcgAu--AUAUGGGUG- -5'
28261 3' -43 NC_005902.1 + 178371 0.73 0.998925
Target:  5'- -----cUACCUAAGCUAUAUACaaGCa -3'
miRNA:   3'- gaaauuGUGGAUUCGAUAUAUGggUG- -5'
28261 3' -43 NC_005902.1 + 178178 0.73 0.999301
Target:  5'- uUUUAACACCUGAuaUA-AUACCUGCa -3'
miRNA:   3'- gAAAUUGUGGAUUcgAUaUAUGGGUG- -5'
28261 3' -43 NC_005902.1 + 177828 0.73 0.999558
Target:  5'- -aUUAACuuuGCCUAAGCUAUAUACaagugaGCa -3'
miRNA:   3'- gaAAUUG---UGGAUUCGAUAUAUGgg----UG- -5'
28261 3' -43 NC_005902.1 + 177592 0.69 0.999997
Target:  5'- uUUUAACACCUAAaCUAuuauuugaUAUACUCAUu -3'
miRNA:   3'- gAAAUUGUGGAUUcGAU--------AUAUGGGUG- -5'
28261 3' -43 NC_005902.1 + 177327 0.72 0.999728
Target:  5'- cCUUUAACACCUAAGUuuauuUGUAUAUagCAUa -3'
miRNA:   3'- -GAAAUUGUGGAUUCG-----AUAUAUGg-GUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.