miRNA display CGI


Results 21 - 40 of 392 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28261 3' -43 NC_005902.1 + 13184 1.08 0.071772
Target:  5'- cCUUUAACACCUAAGCUAUAUACCCAUu -3'
miRNA:   3'- -GAAAUUGUGGAUUCGAUAUAUGGGUG- -5'
28261 3' -43 NC_005902.1 + 95766 0.9 0.531605
Target:  5'- uUUUAACACUUAAGCUAUAUAUUCACu -3'
miRNA:   3'- gAAAUUGUGGAUUCGAUAUAUGGGUG- -5'
28261 3' -43 NC_005902.1 + 136570 0.9 0.520798
Target:  5'- cCUUUAACACCUAAGUUAUAUACUUAUu -3'
miRNA:   3'- -GAAAUUGUGGAUUCGAUAUAUGGGUG- -5'
28261 3' -43 NC_005902.1 + 128774 0.92 0.437965
Target:  5'- cCUUUAACACCUAAGCUAUAUACUUg- -3'
miRNA:   3'- -GAAAUUGUGGAUUCGAUAUAUGGGug -5'
28261 3' -43 NC_005902.1 + 145947 0.95 0.337544
Target:  5'- cCUUUAACAUCUAAGCUAUAUACUCAUu -3'
miRNA:   3'- -GAAAUUGUGGAUUCGAUAUAUGGGUG- -5'
28261 3' -43 NC_005902.1 + 91859 0.9 0.564476
Target:  5'- cCUUUAACACCUAAGCUAUAUACaaAUa -3'
miRNA:   3'- -GAAAUUGUGGAUUCGAUAUAUGggUG- -5'
28261 3' -43 NC_005902.1 + 143645 0.9 0.542492
Target:  5'- -aUUGACACCUAAGCUAUAUACUUAa -3'
miRNA:   3'- gaAAUUGUGGAUUCGAUAUAUGGGUg -5'
28261 3' -43 NC_005902.1 + 162391 0.96 0.305422
Target:  5'- cCUUUAACACCUAAGCUAcAUACUCACu -3'
miRNA:   3'- -GAAAUUGUGGAUUCGAUaUAUGGGUG- -5'
28261 3' -43 NC_005902.1 + 50045 0.91 0.478502
Target:  5'- cCUUUAACACCUAAGCUAUGUucauuugcuauGCUCACu -3'
miRNA:   3'- -GAAAUUGUGGAUUCGAUAUA-----------UGGGUG- -5'
28261 3' -43 NC_005902.1 + 85057 0.92 0.46819
Target:  5'- uUUUAACAUCUAGGCUAUAUACUUACa -3'
miRNA:   3'- gAAAUUGUGGAUUCGAUAUAUGGGUG- -5'
28261 3' -43 NC_005902.1 + 45081 0.97 0.261724
Target:  5'- uUUUAACACCUAAGCUAUAUACUUACu -3'
miRNA:   3'- gAAAUUGUGGAUUCGAUAUAUGGGUG- -5'
28261 3' -43 NC_005902.1 + 47185 0.98 0.235511
Target:  5'- cCUUUAACACUUAAGCUAUAUACUCACc -3'
miRNA:   3'- -GAAAUUGUGGAUUCGAUAUAUGGGUG- -5'
28261 3' -43 NC_005902.1 + 156790 0.88 0.620278
Target:  5'- --cUAACACCUAAGCUAUAUACUUAUu -3'
miRNA:   3'- gaaAUUGUGGAUUCGAUAUAUGGGUG- -5'
28261 3' -43 NC_005902.1 + 54052 0.89 0.575558
Target:  5'- cCUUUAACACCUAAGCUAUAUAUgaACa -3'
miRNA:   3'- -GAAAUUGUGGAUUCGAUAUAUGggUG- -5'
28261 3' -43 NC_005902.1 + 48381 0.9 0.520798
Target:  5'- cCUUUAACACCUAAGUUAUGUACUUAUu -3'
miRNA:   3'- -GAAAUUGUGGAUUCGAUAUAUGGGUG- -5'
28261 3' -43 NC_005902.1 + 95946 0.93 0.390188
Target:  5'- cCUUUAACACUUAAGUUAUAUACUCACu -3'
miRNA:   3'- -GAAAUUGUGGAUUCGAUAUAUGGGUG- -5'
28261 3' -43 NC_005902.1 + 167157 0.95 0.337544
Target:  5'- cCUUUAACACCUAAGCUAUAUACUUAa -3'
miRNA:   3'- -GAAAUUGUGGAUUCGAUAUAUGGGUg -5'
28261 3' -43 NC_005902.1 + 184591 0.99 0.217326
Target:  5'- gCUUUAACACUUAAGCUAUAUACUCACu -3'
miRNA:   3'- -GAAAUUGUGGAUUCGAUAUAUGGGUG- -5'
28261 3' -43 NC_005902.1 + 146428 0.92 0.457994
Target:  5'- cCUUUAACACCUAAGCUAuaauucacUAUGCUCACu -3'
miRNA:   3'- -GAAAUUGUGGAUUCGAU--------AUAUGGGUG- -5'
28261 3' -43 NC_005902.1 + 157852 0.91 0.478502
Target:  5'- aUUUAACACCUAAGCUAUAUAUuuGCu -3'
miRNA:   3'- gAAAUUGUGGAUUCGAUAUAUGggUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.