Results 21 - 40 of 392 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28261 | 3' | -43 | NC_005902.1 | + | 85057 | 0.92 | 0.46819 |
Target: 5'- uUUUAACAUCUAGGCUAUAUACUUACa -3' miRNA: 3'- gAAAUUGUGGAUUCGAUAUAUGGGUG- -5' |
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28261 | 3' | -43 | NC_005902.1 | + | 40969 | 0.93 | 0.428141 |
Target: 5'- cCUUUAAUACCUAAGCUAUAUacACUCACa -3' miRNA: 3'- -GAAAUUGUGGAUUCGAUAUA--UGGGUG- -5' |
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28261 | 3' | -43 | NC_005902.1 | + | 34816 | 0.95 | 0.321183 |
Target: 5'- cCUUUAACACCUAAGUUAUAUACUCAUu -3' miRNA: 3'- -GAAAUUGUGGAUUCGAUAUAUGGGUG- -5' |
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28261 | 3' | -43 | NC_005902.1 | + | 99558 | 1.01 | 0.169857 |
Target: 5'- cCUUUAACACCUAAGCUAUAUACUCAUu -3' miRNA: 3'- -GAAAUUGUGGAUUCGAUAUAUGGGUG- -5' |
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28261 | 3' | -43 | NC_005902.1 | + | 3077 | 0.9 | 0.564476 |
Target: 5'- aUUUAACACCUAAGCUAUAUAUaCACu -3' miRNA: 3'- gAAAUUGUGGAUUCGAUAUAUGgGUG- -5' |
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28261 | 3' | -43 | NC_005902.1 | + | 162594 | 0.9 | 0.520798 |
Target: 5'- ---aAAUACCUAAGCUAUAUACUCACu -3' miRNA: 3'- gaaaUUGUGGAUUCGAUAUAUGGGUG- -5' |
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28261 | 3' | -43 | NC_005902.1 | + | 80736 | 0.93 | 0.399469 |
Target: 5'- uCUUUAACACCUAAGCUAUAUACaaACa -3' miRNA: 3'- -GAAAUUGUGGAUUCGAUAUAUGggUG- -5' |
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28261 | 3' | -43 | NC_005902.1 | + | 23258 | 1.01 | 0.169857 |
Target: 5'- cCUUUAACACCUAAGCUAUAUAUUCACa -3' miRNA: 3'- -GAAAUUGUGGAUUCGAUAUAUGGGUG- -5' |
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28261 | 3' | -43 | NC_005902.1 | + | 58535 | 0.9 | 0.520798 |
Target: 5'- gCUUUAACACUgAAGCUAUAUACUCACu -3' miRNA: 3'- -GAAAUUGUGGaUUCGAUAUAUGGGUG- -5' |
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28261 | 3' | -43 | NC_005902.1 | + | 41984 | 1.02 | 0.147684 |
Target: 5'- gUUUAACACCUAAGCUAUAUACUCACu -3' miRNA: 3'- gAAAUUGUGGAUUCGAUAUAUGGGUG- -5' |
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28261 | 3' | -43 | NC_005902.1 | + | 149202 | 0.93 | 0.399469 |
Target: 5'- uUUUAAUACCUAAGCUAUAUACUCAUu -3' miRNA: 3'- gAAAUUGUGGAUUCGAUAUAUGGGUG- -5' |
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28261 | 3' | -43 | NC_005902.1 | + | 169513 | 0.92 | 0.46819 |
Target: 5'- uCUUUAACACCUGAGCUAUAUAUCuCAg -3' miRNA: 3'- -GAAAUUGUGGAUUCGAUAUAUGG-GUg -5' |
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28261 | 3' | -43 | NC_005902.1 | + | 136047 | 0.94 | 0.354503 |
Target: 5'- cCUUUAACuCCUAAGCUAUAUACUCACu -3' miRNA: 3'- -GAAAUUGuGGAUUCGAUAUAUGGGUG- -5' |
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28261 | 3' | -43 | NC_005902.1 | + | 143020 | 0.95 | 0.337544 |
Target: 5'- cCUUUAACAUCUAAGCUAUAUACUCAUu -3' miRNA: 3'- -GAAAUUGUGGAUUCGAUAUAUGGGUG- -5' |
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28261 | 3' | -43 | NC_005902.1 | + | 47237 | 0.96 | 0.297767 |
Target: 5'- cCUUUAACACCUAAGCUAUAUACaCACu -3' miRNA: 3'- -GAAAUUGUGGAUUCGAUAUAUGgGUG- -5' |
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28261 | 3' | -43 | NC_005902.1 | + | 184591 | 0.99 | 0.217326 |
Target: 5'- gCUUUAACACUUAAGCUAUAUACUCACu -3' miRNA: 3'- -GAAAUUGUGGAUUCGAUAUAUGGGUG- -5' |
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28261 | 3' | -43 | NC_005902.1 | + | 29091 | 0.89 | 0.586688 |
Target: 5'- cCUUUAAUAUUUAAGCUAUAUACUCACu -3' miRNA: 3'- -GAAAUUGUGGAUUCGAUAUAUGGGUG- -5' |
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28261 | 3' | -43 | NC_005902.1 | + | 51424 | 0.9 | 0.564476 |
Target: 5'- -gUUAAUAUCUAAGCUAUAUACUCACu -3' miRNA: 3'- gaAAUUGUGGAUUCGAUAUAUGGGUG- -5' |
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28261 | 3' | -43 | NC_005902.1 | + | 169444 | 0.9 | 0.5414 |
Target: 5'- cCUUUAACACUUAAGCUGUAUauuuguuugcgacACCCACc -3' miRNA: 3'- -GAAAUUGUGGAUUCGAUAUA-------------UGGGUG- -5' |
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28261 | 3' | -43 | NC_005902.1 | + | 48381 | 0.9 | 0.520798 |
Target: 5'- cCUUUAACACCUAAGUUAUGUACUUAUu -3' miRNA: 3'- -GAAAUUGUGGAUUCGAUAUAUGGGUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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