miRNA display CGI


Results 41 - 60 of 392 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28261 3' -43 NC_005902.1 + 3024 0.9 0.553451
Target:  5'- -aUUAACAUCUAAGCUAUAUACUCAUu -3'
miRNA:   3'- gaAAUUGUGGAUUCGAUAUAUGGGUG- -5'
28261 3' -43 NC_005902.1 + 80736 0.93 0.399469
Target:  5'- uCUUUAACACCUAAGCUAUAUACaaACa -3'
miRNA:   3'- -GAAAUUGUGGAUUCGAUAUAUGggUG- -5'
28261 3' -43 NC_005902.1 + 23258 1.01 0.169857
Target:  5'- cCUUUAACACCUAAGCUAUAUAUUCACa -3'
miRNA:   3'- -GAAAUUGUGGAUUCGAUAUAUGGGUG- -5'
28261 3' -43 NC_005902.1 + 143645 0.9 0.542492
Target:  5'- -aUUGACACCUAAGCUAUAUACUUAa -3'
miRNA:   3'- gaAAUUGUGGAUUCGAUAUAUGGGUg -5'
28261 3' -43 NC_005902.1 + 41984 1.02 0.147684
Target:  5'- gUUUAACACCUAAGCUAUAUACUCACu -3'
miRNA:   3'- gAAAUUGUGGAUUCGAUAUAUGGGUG- -5'
28261 3' -43 NC_005902.1 + 20282 0.85 0.783657
Target:  5'- cCUUUAACACCUAAGUUAacaUAUACUUACu -3'
miRNA:   3'- -GAAAUUGUGGAUUCGAU---AUAUGGGUG- -5'
28261 3' -43 NC_005902.1 + 184591 0.99 0.217326
Target:  5'- gCUUUAACACUUAAGCUAUAUACUCACu -3'
miRNA:   3'- -GAAAUUGUGGAUUCGAUAUAUGGGUG- -5'
28261 3' -43 NC_005902.1 + 97177 0.85 0.773464
Target:  5'- cCUUUAACACCUAAGCUAUAUAUgaAUg -3'
miRNA:   3'- -GAAAUUGUGGAUUCGAUAUAUGggUG- -5'
28261 3' -43 NC_005902.1 + 149800 0.86 0.752632
Target:  5'- uUUUAACACCUAAGUUAUGUACUauuCACu -3'
miRNA:   3'- gAAAUUGUGGAUUCGAUAUAUGG---GUG- -5'
28261 3' -43 NC_005902.1 + 11496 0.87 0.69853
Target:  5'- uUUUAAUAUCUAAGCUAUAUACUUACu -3'
miRNA:   3'- gAAAUUGUGGAUUCGAUAUAUGGGUG- -5'
28261 3' -43 NC_005902.1 + 54872 0.87 0.665166
Target:  5'- cCUUUAACACCUAAGCUAU-UACUCAa -3'
miRNA:   3'- -GAAAUUGUGGAUUCGAUAuAUGGGUg -5'
28261 3' -43 NC_005902.1 + 29091 0.89 0.586688
Target:  5'- cCUUUAAUAUUUAAGCUAUAUACUCACu -3'
miRNA:   3'- -GAAAUUGUGGAUUCGAUAUAUGGGUG- -5'
28261 3' -43 NC_005902.1 + 51424 0.9 0.564476
Target:  5'- -gUUAAUAUCUAAGCUAUAUACUCACu -3'
miRNA:   3'- gaAAUUGUGGAUUCGAUAUAUGGGUG- -5'
28261 3' -43 NC_005902.1 + 136570 0.9 0.520798
Target:  5'- cCUUUAACACCUAAGUUAUAUACUUAUu -3'
miRNA:   3'- -GAAAUUGUGGAUUCGAUAUAUGGGUG- -5'
28261 3' -43 NC_005902.1 + 58535 0.9 0.520798
Target:  5'- gCUUUAACACUgAAGCUAUAUACUCACu -3'
miRNA:   3'- -GAAAUUGUGGaUUCGAUAUAUGGGUG- -5'
28261 3' -43 NC_005902.1 + 85057 0.92 0.46819
Target:  5'- uUUUAACAUCUAGGCUAUAUACUUACa -3'
miRNA:   3'- gAAAUUGUGGAUUCGAUAUAUGGGUG- -5'
28261 3' -43 NC_005902.1 + 40969 0.93 0.428141
Target:  5'- cCUUUAAUACCUAAGCUAUAUacACUCACa -3'
miRNA:   3'- -GAAAUUGUGGAUUCGAUAUA--UGGGUG- -5'
28261 3' -43 NC_005902.1 + 136047 0.94 0.354503
Target:  5'- cCUUUAACuCCUAAGCUAUAUACUCACu -3'
miRNA:   3'- -GAAAUUGuGGAUUCGAUAUAUGGGUG- -5'
28261 3' -43 NC_005902.1 + 143020 0.95 0.337544
Target:  5'- cCUUUAACAUCUAAGCUAUAUACUCAUu -3'
miRNA:   3'- -GAAAUUGUGGAUUCGAUAUAUGGGUG- -5'
28261 3' -43 NC_005902.1 + 47237 0.96 0.297767
Target:  5'- cCUUUAACACCUAAGCUAUAUACaCACu -3'
miRNA:   3'- -GAAAUUGUGGAUUCGAUAUAUGgGUG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.