miRNA display CGI


Results 41 - 60 of 392 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28261 3' -43 NC_005902.1 + 134050 0.68 0.999999
Target:  5'- -aUUAACuCCUAAGUUAUAUACaaAUg -3'
miRNA:   3'- gaAAUUGuGGAUUCGAUAUAUGggUG- -5'
28261 3' -43 NC_005902.1 + 16519 0.68 0.999998
Target:  5'- --gUAACACCUGAGaUAUAUaGCUCAg -3'
miRNA:   3'- gaaAUUGUGGAUUCgAUAUA-UGGGUg -5'
28261 3' -43 NC_005902.1 + 11284 0.68 0.999998
Target:  5'- uCUUUAACACUUAAGUgUAUAUACaaAUa -3'
miRNA:   3'- -GAAAUUGUGGAUUCG-AUAUAUGggUG- -5'
28261 3' -43 NC_005902.1 + 90423 0.68 0.999998
Target:  5'- aCUUUAACAUCUAAGUgUAUAUAUaaaACa -3'
miRNA:   3'- -GAAAUUGUGGAUUCG-AUAUAUGgg-UG- -5'
28261 3' -43 NC_005902.1 + 20063 0.68 0.999999
Target:  5'- cCUUUAACACaUAAGCcAUAUACaaACa -3'
miRNA:   3'- -GAAAUUGUGgAUUCGaUAUAUGggUG- -5'
28261 3' -43 NC_005902.1 + 41852 0.68 0.999999
Target:  5'- cCUUUAACAUCUAAaCUAUAUACaaguaaGCa -3'
miRNA:   3'- -GAAAUUGUGGAUUcGAUAUAUGgg----UG- -5'
28261 3' -43 NC_005902.1 + 101192 0.69 0.999993
Target:  5'- -aUUAAUAUUUAAGCUAUAcuuauuUACCuCACu -3'
miRNA:   3'- gaAAUUGUGGAUUCGAUAU------AUGG-GUG- -5'
28261 3' -43 NC_005902.1 + 153032 0.69 0.999998
Target:  5'- aCUUUuaAACAUUUAAGCUAUGUACaaAUg -3'
miRNA:   3'- -GAAA--UUGUGGAUUCGAUAUAUGggUG- -5'
28261 3' -43 NC_005902.1 + 8697 0.69 0.999998
Target:  5'- -gUUAACACUUAuGCUAUAUACaaAUa -3'
miRNA:   3'- gaAAUUGUGGAUuCGAUAUAUGggUG- -5'
28261 3' -43 NC_005902.1 + 122904 0.69 0.999995
Target:  5'- uUUUAACAUCUAAGUgAUAUACUUg- -3'
miRNA:   3'- gAAAUUGUGGAUUCGaUAUAUGGGug -5'
28261 3' -43 NC_005902.1 + 67931 0.69 0.999997
Target:  5'- cCUUUGACcCCUAA-CUAUAUACaCACu -3'
miRNA:   3'- -GAAAUUGuGGAUUcGAUAUAUGgGUG- -5'
28261 3' -43 NC_005902.1 + 40671 0.69 0.999995
Target:  5'- cCUUUAACGuuUAAGCUAUAUAUaUAUg -3'
miRNA:   3'- -GAAAUUGUggAUUCGAUAUAUGgGUG- -5'
28261 3' -43 NC_005902.1 + 16890 0.69 0.999995
Target:  5'- uUUUAACAUCUAAGCUAUgaacaaGUGUCUAUa -3'
miRNA:   3'- gAAAUUGUGGAUUCGAUA------UAUGGGUG- -5'
28261 3' -43 NC_005902.1 + 145342 0.69 0.999993
Target:  5'- -----uUAUCUAAGCUAUAUACaCACu -3'
miRNA:   3'- gaaauuGUGGAUUCGAUAUAUGgGUG- -5'
28261 3' -43 NC_005902.1 + 95408 0.69 0.999995
Target:  5'- cCUUUAACACCUAAaUUAUAUAUgaACa -3'
miRNA:   3'- -GAAAUUGUGGAUUcGAUAUAUGggUG- -5'
28261 3' -43 NC_005902.1 + 71324 0.69 0.999995
Target:  5'- -gUUAACAUCUAAGUUAUAUAUaaAUa -3'
miRNA:   3'- gaAAUUGUGGAUUCGAUAUAUGggUG- -5'
28261 3' -43 NC_005902.1 + 94139 0.69 0.999997
Target:  5'- aUUUAuccuuUAUUUAAGCUAUAUACUCAUu -3'
miRNA:   3'- gAAAUu----GUGGAUUCGAUAUAUGGGUG- -5'
28261 3' -43 NC_005902.1 + 46322 0.69 0.999997
Target:  5'- --aUAAgUACCcAAGCUAUAUAUUCACu -3'
miRNA:   3'- gaaAUU-GUGGaUUCGAUAUAUGGGUG- -5'
28261 3' -43 NC_005902.1 + 72222 0.69 0.999997
Target:  5'- -gUUAACACCUAAaCUAUAUAUaCAUa -3'
miRNA:   3'- gaAAUUGUGGAUUcGAUAUAUGgGUG- -5'
28261 3' -43 NC_005902.1 + 177592 0.69 0.999997
Target:  5'- uUUUAACACCUAAaCUAuuauuugaUAUACUCAUu -3'
miRNA:   3'- gAAAUUGUGGAUUcGAU--------AUAUGGGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.