miRNA display CGI


Results 41 - 60 of 392 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28261 3' -43 NC_005902.1 + 110000 0.66 1
Target:  5'- cCUUcAAUAUCUAAGCUAUAUuAUUUACu -3'
miRNA:   3'- -GAAaUUGUGGAUUCGAUAUA-UGGGUG- -5'
28261 3' -43 NC_005902.1 + 100526 0.66 1
Target:  5'- uUUUGACACCUAAuCUAUAaACaaGCa -3'
miRNA:   3'- gAAAUUGUGGAUUcGAUAUaUGggUG- -5'
28261 3' -43 NC_005902.1 + 49766 0.66 1
Target:  5'- ---cAACACCUAAaCUAuauauuuguuugcUAUACCUACu -3'
miRNA:   3'- gaaaUUGUGGAUUcGAU-------------AUAUGGGUG- -5'
28261 3' -43 NC_005902.1 + 15310 0.67 1
Target:  5'- -aUUAACACCUGAaUUAUAUAUgCAa -3'
miRNA:   3'- gaAAUUGUGGAUUcGAUAUAUGgGUg -5'
28261 3' -43 NC_005902.1 + 76783 0.67 1
Target:  5'- ----uACAUUUAGGCUAUAUACaaACa -3'
miRNA:   3'- gaaauUGUGGAUUCGAUAUAUGggUG- -5'
28261 3' -43 NC_005902.1 + 49437 0.67 1
Target:  5'- uUUUAACACCUAAGUUAUAaauagggGCa-GCa -3'
miRNA:   3'- gAAAUUGUGGAUUCGAUAUa------UGggUG- -5'
28261 3' -43 NC_005902.1 + 127717 0.67 1
Target:  5'- --aUAACGCCUuggGAGUUAaacUGUACUUACu -3'
miRNA:   3'- gaaAUUGUGGA---UUCGAU---AUAUGGGUG- -5'
28261 3' -43 NC_005902.1 + 81054 0.67 1
Target:  5'- uUUUAACAUCUAAGCUAUAcaauUAagCAUa -3'
miRNA:   3'- gAAAUUGUGGAUUCGAUAU----AUggGUG- -5'
28261 3' -43 NC_005902.1 + 36098 0.67 1
Target:  5'- cCUUUAACACCUAAGgUGUGguugaUgACa -3'
miRNA:   3'- -GAAAUUGUGGAUUCgAUAUaug--GgUG- -5'
28261 3' -43 NC_005902.1 + 41852 0.68 0.999999
Target:  5'- cCUUUAACAUCUAAaCUAUAUACaaguaaGCa -3'
miRNA:   3'- -GAAAUUGUGGAUUcGAUAUAUGgg----UG- -5'
28261 3' -43 NC_005902.1 + 20063 0.68 0.999999
Target:  5'- cCUUUAACACaUAAGCcAUAUACaaACa -3'
miRNA:   3'- -GAAAUUGUGgAUUCGaUAUAUGggUG- -5'
28261 3' -43 NC_005902.1 + 90423 0.68 0.999998
Target:  5'- aCUUUAACAUCUAAGUgUAUAUAUaaaACa -3'
miRNA:   3'- -GAAAUUGUGGAUUCG-AUAUAUGgg-UG- -5'
28261 3' -43 NC_005902.1 + 16519 0.68 0.999998
Target:  5'- --gUAACACCUGAGaUAUAUaGCUCAg -3'
miRNA:   3'- gaaAUUGUGGAUUCgAUAUA-UGGGUg -5'
28261 3' -43 NC_005902.1 + 11284 0.68 0.999998
Target:  5'- uCUUUAACACUUAAGUgUAUAUACaaAUa -3'
miRNA:   3'- -GAAAUUGUGGAUUCG-AUAUAUGggUG- -5'
28261 3' -43 NC_005902.1 + 153032 0.69 0.999998
Target:  5'- aCUUUuaAACAUUUAAGCUAUGUACaaAUg -3'
miRNA:   3'- -GAAA--UUGUGGAUUCGAUAUAUGggUG- -5'
28261 3' -43 NC_005902.1 + 8697 0.69 0.999998
Target:  5'- -gUUAACACUUAuGCUAUAUACaaAUa -3'
miRNA:   3'- gaAAUUGUGGAUuCGAUAUAUGggUG- -5'
28261 3' -43 NC_005902.1 + 177592 0.69 0.999997
Target:  5'- uUUUAACACCUAAaCUAuuauuugaUAUACUCAUu -3'
miRNA:   3'- gAAAUUGUGGAUUcGAU--------AUAUGGGUG- -5'
28261 3' -43 NC_005902.1 + 72222 0.69 0.999997
Target:  5'- -gUUAACACCUAAaCUAUAUAUaCAUa -3'
miRNA:   3'- gaAAUUGUGGAUUcGAUAUAUGgGUG- -5'
28261 3' -43 NC_005902.1 + 46322 0.69 0.999997
Target:  5'- --aUAAgUACCcAAGCUAUAUAUUCACu -3'
miRNA:   3'- gaaAUU-GUGGaUUCGAUAUAUGGGUG- -5'
28261 3' -43 NC_005902.1 + 16890 0.69 0.999995
Target:  5'- uUUUAACAUCUAAGCUAUgaacaaGUGUCUAUa -3'
miRNA:   3'- gAAAUUGUGGAUUCGAUA------UAUGGGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.