Results 21 - 40 of 392 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28261 | 3' | -43 | NC_005902.1 | + | 146735 | 0.94 | 0.381049 |
Target: 5'- cCUUUAACACCUAAGCUAUAUACaaACa -3' miRNA: 3'- -GAAAUUGUGGAUUCGAUAUAUGggUG- -5' |
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28261 | 3' | -43 | NC_005902.1 | + | 140869 | 0.93 | 0.399469 |
Target: 5'- uCUUUAACAUCUAAGCUGUAUACUCAa -3' miRNA: 3'- -GAAAUUGUGGAUUCGAUAUAUGGGUg -5' |
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28261 | 3' | -43 | NC_005902.1 | + | 39098 | 0.93 | 0.399469 |
Target: 5'- uCUUUAACACCUAAGCUAUAUACaaACa -3' miRNA: 3'- -GAAAUUGUGGAUUCGAUAUAUGggUG- -5' |
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28261 | 3' | -43 | NC_005902.1 | + | 44017 | 0.93 | 0.40889 |
Target: 5'- uUUUAACACCUAAGCUAUAUACaCGCa -3' miRNA: 3'- gAAAUUGUGGAUUCGAUAUAUGgGUG- -5' |
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28261 | 3' | -43 | NC_005902.1 | + | 95946 | 0.93 | 0.390188 |
Target: 5'- cCUUUAACACUUAAGUUAUAUACUCACu -3' miRNA: 3'- -GAAAUUGUGGAUUCGAUAUAUGGGUG- -5' |
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28261 | 3' | -43 | NC_005902.1 | + | 80736 | 0.93 | 0.399469 |
Target: 5'- uCUUUAACACCUAAGCUAUAUACaaACa -3' miRNA: 3'- -GAAAUUGUGGAUUCGAUAUAUGggUG- -5' |
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28261 | 3' | -43 | NC_005902.1 | + | 40969 | 0.93 | 0.428141 |
Target: 5'- cCUUUAAUACCUAAGCUAUAUacACUCACa -3' miRNA: 3'- -GAAAUUGUGGAUUCGAUAUA--UGGGUG- -5' |
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28261 | 3' | -43 | NC_005902.1 | + | 149202 | 0.93 | 0.399469 |
Target: 5'- uUUUAAUACCUAAGCUAUAUACUCAUu -3' miRNA: 3'- gAAAUUGUGGAUUCGAUAUAUGGGUG- -5' |
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28261 | 3' | -43 | NC_005902.1 | + | 146428 | 0.92 | 0.457994 |
Target: 5'- cCUUUAACACCUAAGCUAuaauucacUAUGCUCACu -3' miRNA: 3'- -GAAAUUGUGGAUUCGAU--------AUAUGGGUG- -5' |
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28261 | 3' | -43 | NC_005902.1 | + | 128774 | 0.92 | 0.437965 |
Target: 5'- cCUUUAACACCUAAGCUAUAUACUUg- -3' miRNA: 3'- -GAAAUUGUGGAUUCGAUAUAUGGGug -5' |
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28261 | 3' | -43 | NC_005902.1 | + | 169513 | 0.92 | 0.46819 |
Target: 5'- uCUUUAACACCUGAGCUAUAUAUCuCAg -3' miRNA: 3'- -GAAAUUGUGGAUUCGAUAUAUGG-GUg -5' |
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28261 | 3' | -43 | NC_005902.1 | + | 156551 | 0.92 | 0.46819 |
Target: 5'- uUUUAACACCUAAGCUAUAUAUUUACu -3' miRNA: 3'- gAAAUUGUGGAUUCGAUAUAUGGGUG- -5' |
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28261 | 3' | -43 | NC_005902.1 | + | 85057 | 0.92 | 0.46819 |
Target: 5'- uUUUAACAUCUAGGCUAUAUACUUACa -3' miRNA: 3'- gAAAUUGUGGAUUCGAUAUAUGGGUG- -5' |
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28261 | 3' | -43 | NC_005902.1 | + | 50045 | 0.91 | 0.478502 |
Target: 5'- cCUUUAACACCUAAGCUAUGUucauuugcuauGCUCACu -3' miRNA: 3'- -GAAAUUGUGGAUUCGAUAUA-----------UGGGUG- -5' |
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28261 | 3' | -43 | NC_005902.1 | + | 157230 | 0.91 | 0.488924 |
Target: 5'- cCUUUAACACCUAAGCUAUAUACaaaagagCACa -3' miRNA: 3'- -GAAAUUGUGGAUUCGAUAUAUGg------GUG- -5' |
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28261 | 3' | -43 | NC_005902.1 | + | 51676 | 0.91 | 0.478502 |
Target: 5'- uUUUAACACUUAAGCUAUAUACUCAUu -3' miRNA: 3'- gAAAUUGUGGAUUCGAUAUAUGGGUG- -5' |
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28261 | 3' | -43 | NC_005902.1 | + | 76087 | 0.91 | 0.510078 |
Target: 5'- cCUUUAAgACCUAAGCUAUAUAUUCACu -3' miRNA: 3'- -GAAAUUgUGGAUUCGAUAUAUGGGUG- -5' |
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28261 | 3' | -43 | NC_005902.1 | + | 160882 | 0.91 | 0.478502 |
Target: 5'- aUUUAACcCCUAAGCUAUAUACUCACu -3' miRNA: 3'- gAAAUUGuGGAUUCGAUAUAUGGGUG- -5' |
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28261 | 3' | -43 | NC_005902.1 | + | 157852 | 0.91 | 0.478502 |
Target: 5'- aUUUAACACCUAAGCUAUAUAUuuGCu -3' miRNA: 3'- gAAAUUGUGGAUUCGAUAUAUGggUG- -5' |
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28261 | 3' | -43 | NC_005902.1 | + | 119010 | 0.9 | 0.542492 |
Target: 5'- cCUUUAACuCCUAAGCUAUAUACUCAUu -3' miRNA: 3'- -GAAAUUGuGGAUUCGAUAUAUGGGUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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