miRNA display CGI


Results 61 - 80 of 392 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28261 3' -43 NC_005902.1 + 27883 0.81 0.923674
Target:  5'- -gUUAAUGCCUAAGCUAUAUAUgCAUu -3'
miRNA:   3'- gaAAUUGUGGAUUCGAUAUAUGgGUG- -5'
28261 3' -43 NC_005902.1 + 28156 0.79 0.966173
Target:  5'- uUUUAACACCUAAGCUAUAUAaaguguaGCa -3'
miRNA:   3'- gAAAUUGUGGAUUCGAUAUAUggg----UG- -5'
28261 3' -43 NC_005902.1 + 28837 0.85 0.773464
Target:  5'- -gUUAAUACCUAAGCUAUAUAUUUACu -3'
miRNA:   3'- gaAAUUGUGGAUUCGAUAUAUGGGUG- -5'
28261 3' -43 NC_005902.1 + 28979 0.79 0.966173
Target:  5'- -gUUAACACCUAAGCUAUAcACaaACg -3'
miRNA:   3'- gaAAUUGUGGAUUCGAUAUaUGggUG- -5'
28261 3' -43 NC_005902.1 + 29091 0.89 0.586688
Target:  5'- cCUUUAAUAUUUAAGCUAUAUACUCACu -3'
miRNA:   3'- -GAAAUUGUGGAUUCGAUAUAUGGGUG- -5'
28261 3' -43 NC_005902.1 + 29214 0.89 0.597857
Target:  5'- uCUUUAACACCUAAGCUAUAUAUgaACa -3'
miRNA:   3'- -GAAAUUGUGGAUUCGAUAUAUGggUG- -5'
28261 3' -43 NC_005902.1 + 29571 0.71 0.999948
Target:  5'- uUUUAAUAUCcAAGCUAUAUAUUUACu -3'
miRNA:   3'- gAAAUUGUGGaUUCGAUAUAUGGGUG- -5'
28261 3' -43 NC_005902.1 + 29611 0.89 0.586688
Target:  5'- cCUUUAACAUUUAAGCUAUAUACUCAUu -3'
miRNA:   3'- -GAAAUUGUGGAUUCGAUAUAUGGGUG- -5'
28261 3' -43 NC_005902.1 + 30799 0.84 0.813208
Target:  5'- cCUUUAACAUCUAAGCUAUAUACgCu- -3'
miRNA:   3'- -GAAAUUGUGGAUUCGAUAUAUGgGug -5'
28261 3' -43 NC_005902.1 + 31418 0.89 0.575558
Target:  5'- cCUUUAAUACCUAAGCUAUAUACaaACa -3'
miRNA:   3'- -GAAAUUGUGGAUUCGAUAUAUGggUG- -5'
28261 3' -43 NC_005902.1 + 32357 0.79 0.969545
Target:  5'- -gUUAACAUCUAAaCUAUAUACUCACu -3'
miRNA:   3'- gaAAUUGUGGAUUcGAUAUAUGGGUG- -5'
28261 3' -43 NC_005902.1 + 32978 0.85 0.793687
Target:  5'- -gUUAACACCUAAaCUAUAUACUCACu -3'
miRNA:   3'- gaAAUUGUGGAUUcGAUAUAUGGGUG- -5'
28261 3' -43 NC_005902.1 + 33374 0.66 1
Target:  5'- gUUUGGCACCaaucgcuUGAGCgcauacaAUGCCUACu -3'
miRNA:   3'- gAAAUUGUGG-------AUUCGaua----UAUGGGUG- -5'
28261 3' -43 NC_005902.1 + 34816 0.95 0.321183
Target:  5'- cCUUUAACACCUAAGUUAUAUACUCAUu -3'
miRNA:   3'- -GAAAUUGUGGAUUCGAUAUAUGGGUG- -5'
28261 3' -43 NC_005902.1 + 36098 0.67 1
Target:  5'- cCUUUAACACCUAAGgUGUGguugaUgACa -3'
miRNA:   3'- -GAAAUUGUGGAUUCgAUAUaug--GgUG- -5'
28261 3' -43 NC_005902.1 + 36165 0.81 0.923674
Target:  5'- uUUUAACAUCUAAGCUAUAUAUaaACa -3'
miRNA:   3'- gAAAUUGUGGAUUCGAUAUAUGggUG- -5'
28261 3' -43 NC_005902.1 + 36802 0.7 0.99999
Target:  5'- uUUUAACACUUAAGCUAUA----CACa -3'
miRNA:   3'- gAAAUUGUGGAUUCGAUAUauggGUG- -5'
28261 3' -43 NC_005902.1 + 36971 0.75 0.995271
Target:  5'- -----uUACCUAAGCUAUAUACUUAUu -3'
miRNA:   3'- gaaauuGUGGAUUCGAUAUAUGGGUG- -5'
28261 3' -43 NC_005902.1 + 37201 0.73 0.999301
Target:  5'- uUUUAAUACauauuUAAGCUAUAUAUUCACu -3'
miRNA:   3'- gAAAUUGUGg----AUUCGAUAUAUGGGUG- -5'
28261 3' -43 NC_005902.1 + 37260 0.82 0.8974
Target:  5'- -cUUAACACUUAAGCUAUAuacaUACCCGu -3'
miRNA:   3'- gaAAUUGUGGAUUCGAUAU----AUGGGUg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.