miRNA display CGI


Results 101 - 120 of 392 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28261 3' -43 NC_005902.1 + 48224 0.7 0.999972
Target:  5'- cCUUUAACuCUUAAGCUAcauauuUGCUCACu -3'
miRNA:   3'- -GAAAUUGuGGAUUCGAUau----AUGGGUG- -5'
28261 3' -43 NC_005902.1 + 48255 0.87 0.665166
Target:  5'- cCUUUAACACUUAAGCUAUAUAUaCACa -3'
miRNA:   3'- -GAAAUUGUGGAUUCGAUAUAUGgGUG- -5'
28261 3' -43 NC_005902.1 + 48381 0.9 0.520798
Target:  5'- cCUUUAACACCUAAGUUAUGUACUUAUu -3'
miRNA:   3'- -GAAAUUGUGGAUUCGAUAUAUGGGUG- -5'
28261 3' -43 NC_005902.1 + 48508 0.72 0.999789
Target:  5'- -gUUAAUAUCUAAGCcAUAUACUUGCu -3'
miRNA:   3'- gaAAUUGUGGAUUCGaUAUAUGGGUG- -5'
28261 3' -43 NC_005902.1 + 49109 0.82 0.8974
Target:  5'- aCUUUAAUACCUAcaCUAUAUACUCACu -3'
miRNA:   3'- -GAAAUUGUGGAUucGAUAUAUGGGUG- -5'
28261 3' -43 NC_005902.1 + 49437 0.67 1
Target:  5'- uUUUAACACCUAAGUUAUAaauagggGCa-GCa -3'
miRNA:   3'- gAAAUUGUGGAUUCGAUAUa------UGggUG- -5'
28261 3' -43 NC_005902.1 + 49766 0.66 1
Target:  5'- ---cAACACCUAAaCUAuauauuuguuugcUAUACCUACu -3'
miRNA:   3'- gaaaUUGUGGAUUcGAU-------------AUAUGGGUG- -5'
28261 3' -43 NC_005902.1 + 49954 0.83 0.866695
Target:  5'- cCUUUAACuCCUAAGCUAUAUACaaACa -3'
miRNA:   3'- -GAAAUUGuGGAUUCGAUAUAUGggUG- -5'
28261 3' -43 NC_005902.1 + 50045 0.91 0.478502
Target:  5'- cCUUUAACACCUAAGCUAUGUucauuugcuauGCUCACu -3'
miRNA:   3'- -GAAAUUGUGGAUUCGAUAUA-----------UGGGUG- -5'
28261 3' -43 NC_005902.1 + 50115 0.83 0.849792
Target:  5'- --cUAACACCUAAGCUAcAUACUUACu -3'
miRNA:   3'- gaaAUUGUGGAUUCGAUaUAUGGGUG- -5'
28261 3' -43 NC_005902.1 + 50212 0.86 0.709533
Target:  5'- cCUUUAACACCUAAGCUAUAUAUa-GCu -3'
miRNA:   3'- -GAAAUUGUGGAUUCGAUAUAUGggUG- -5'
28261 3' -43 NC_005902.1 + 50821 0.84 0.822677
Target:  5'- cCUUUAACAUCUAAaCUAUAUACUCACu -3'
miRNA:   3'- -GAAAUUGUGGAUUcGAUAUAUGGGUG- -5'
28261 3' -43 NC_005902.1 + 51424 0.9 0.564476
Target:  5'- -gUUAAUAUCUAAGCUAUAUACUCACu -3'
miRNA:   3'- gaAAUUGUGGAUUCGAUAUAUGGGUG- -5'
28261 3' -43 NC_005902.1 + 51610 0.76 0.991247
Target:  5'- cCUUUAAUACCUAAGCUGUGaAUaaGCg -3'
miRNA:   3'- -GAAAUUGUGGAUUCGAUAUaUGggUG- -5'
28261 3' -43 NC_005902.1 + 51676 0.91 0.478502
Target:  5'- uUUUAACACUUAAGCUAUAUACUCAUu -3'
miRNA:   3'- gAAAUUGUGGAUUCGAUAUAUGGGUG- -5'
28261 3' -43 NC_005902.1 + 51851 0.82 0.890128
Target:  5'- cCUUUAACAUCUAAGCUAUAUACa--- -3'
miRNA:   3'- -GAAAUUGUGGAUUCGAUAUAUGggug -5'
28261 3' -43 NC_005902.1 + 51970 0.71 0.999906
Target:  5'- -----uUACCUAAGCUAuaUAUACUCAUu -3'
miRNA:   3'- gaaauuGUGGAUUCGAU--AUAUGGGUG- -5'
28261 3' -43 NC_005902.1 + 52775 0.73 0.999558
Target:  5'- uUUUAACACCUAAGUUAUAUAa---- -3'
miRNA:   3'- gAAAUUGUGGAUUCGAUAUAUgggug -5'
28261 3' -43 NC_005902.1 + 54052 0.89 0.575558
Target:  5'- cCUUUAACACCUAAGCUAUAUAUgaACa -3'
miRNA:   3'- -GAAAUUGUGGAUUCGAUAUAUGggUG- -5'
28261 3' -43 NC_005902.1 + 54343 0.85 0.773464
Target:  5'- -aUUAACACCUAAGCUAUAUauauGCUCAUu -3'
miRNA:   3'- gaAAUUGUGGAUUCGAUAUA----UGGGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.