miRNA display CGI


Results 101 - 120 of 392 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28261 3' -43 NC_005902.1 + 144150 0.8 0.9545
Target:  5'- uCUUUAAUACCUAAuCUAUAUAUUCACu -3'
miRNA:   3'- -GAAAUUGUGGAUUcGAUAUAUGGGUG- -5'
28261 3' -43 NC_005902.1 + 147595 0.79 0.958658
Target:  5'- --gUAACACCUAAGCUAUAUAUaaaugagCGCa -3'
miRNA:   3'- gaaAUUGUGGAUUCGAUAUAUGg------GUG- -5'
28261 3' -43 NC_005902.1 + 170850 0.79 0.962546
Target:  5'- cCUUUAACAUgUAAGCUAUAUACaaACu -3'
miRNA:   3'- -GAAAUUGUGgAUUCGAUAUAUGggUG- -5'
28261 3' -43 NC_005902.1 + 26260 0.79 0.966173
Target:  5'- cCUUUAAUACUU-AGCUAUAUACUUACu -3'
miRNA:   3'- -GAAAUUGUGGAuUCGAUAUAUGGGUG- -5'
28261 3' -43 NC_005902.1 + 81285 0.78 0.975556
Target:  5'- -gUUAACAUCUAAGCUAUAUACaaAUa -3'
miRNA:   3'- gaAAUUGUGGAUUCGAUAUAUGggUG- -5'
28261 3' -43 NC_005902.1 + 173890 0.85 0.783657
Target:  5'- -gUUAAUACUUAAGCUAUAUACUCAUu -3'
miRNA:   3'- gaAAUUGUGGAUUCGAUAUAUGGGUG- -5'
28261 3' -43 NC_005902.1 + 147754 0.85 0.773464
Target:  5'- aCUUUAACAUCUAAGCUAUAa--CCACa -3'
miRNA:   3'- -GAAAUUGUGGAUUCGAUAUaugGGUG- -5'
28261 3' -43 NC_005902.1 + 47185 0.98 0.235511
Target:  5'- cCUUUAACACUUAAGCUAUAUACUCACc -3'
miRNA:   3'- -GAAAUUGUGGAUUCGAUAUAUGGGUG- -5'
28261 3' -43 NC_005902.1 + 162391 0.96 0.305422
Target:  5'- cCUUUAACACCUAAGCUAcAUACUCACu -3'
miRNA:   3'- -GAAAUUGUGGAUUCGAUaUAUGGGUG- -5'
28261 3' -43 NC_005902.1 + 145947 0.95 0.337544
Target:  5'- cCUUUAACAUCUAAGCUAUAUACUCAUu -3'
miRNA:   3'- -GAAAUUGUGGAUUCGAUAUAUGGGUG- -5'
28261 3' -43 NC_005902.1 + 95946 0.93 0.390188
Target:  5'- cCUUUAACACUUAAGUUAUAUACUCACu -3'
miRNA:   3'- -GAAAUUGUGGAUUCGAUAUAUGGGUG- -5'
28261 3' -43 NC_005902.1 + 128774 0.92 0.437965
Target:  5'- cCUUUAACACCUAAGCUAUAUACUUg- -3'
miRNA:   3'- -GAAAUUGUGGAUUCGAUAUAUGGGug -5'
28261 3' -43 NC_005902.1 + 169513 0.92 0.46819
Target:  5'- uCUUUAACACCUGAGCUAUAUAUCuCAg -3'
miRNA:   3'- -GAAAUUGUGGAUUCGAUAUAUGG-GUg -5'
28261 3' -43 NC_005902.1 + 162594 0.9 0.520798
Target:  5'- ---aAAUACCUAAGCUAUAUACUCACu -3'
miRNA:   3'- gaaaUUGUGGAUUCGAUAUAUGGGUG- -5'
28261 3' -43 NC_005902.1 + 95766 0.9 0.531605
Target:  5'- uUUUAACACUUAAGCUAUAUAUUCACu -3'
miRNA:   3'- gAAAUUGUGGAUUCGAUAUAUGGGUG- -5'
28261 3' -43 NC_005902.1 + 91859 0.9 0.564476
Target:  5'- cCUUUAACACCUAAGCUAUAUACaaAUa -3'
miRNA:   3'- -GAAAUUGUGGAUUCGAUAUAUGggUG- -5'
28261 3' -43 NC_005902.1 + 156790 0.88 0.620278
Target:  5'- --cUAACACCUAAGCUAUAUACUUAUu -3'
miRNA:   3'- gaaAUUGUGGAUUCGAUAUAUGGGUG- -5'
28261 3' -43 NC_005902.1 + 180829 0.87 0.676335
Target:  5'- --cUAACACCUAAGCgAUAUACUCACu -3'
miRNA:   3'- gaaAUUGUGGAUUCGaUAUAUGGGUG- -5'
28261 3' -43 NC_005902.1 + 50212 0.86 0.709533
Target:  5'- cCUUUAACACCUAAGCUAUAUAUa-GCu -3'
miRNA:   3'- -GAAAUUGUGGAUUCGAUAUAUGggUG- -5'
28261 3' -43 NC_005902.1 + 23467 0.85 0.773464
Target:  5'- cCUUUAACACCUAAuCUAUAUACUUACu -3'
miRNA:   3'- -GAAAUUGUGGAUUcGAUAUAUGGGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.