Results 61 - 80 of 216 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28261 | 5' | -40.8 | NC_005902.1 | + | 164731 | 0.71 | 0.999996 |
Target: 5'- -----aGUAUAUAGCUUAGaUGUUAAa -3' miRNA: 3'- aacaaaCAUAUAUCGAAUCcACAAUU- -5' |
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28261 | 5' | -40.8 | NC_005902.1 | + | 48608 | 0.71 | 0.999996 |
Target: 5'- -----aGUGUAUAGCUUAGaUGUUAAa -3' miRNA: 3'- aacaaaCAUAUAUCGAAUCcACAAUU- -5' |
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28261 | 5' | -40.8 | NC_005902.1 | + | 49473 | 0.71 | 0.999996 |
Target: 5'- -----aGUAUAUAaCUUAGGUGUUAAa -3' miRNA: 3'- aacaaaCAUAUAUcGAAUCCACAAUU- -5' |
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28261 | 5' | -40.8 | NC_005902.1 | + | 151227 | 0.71 | 0.999996 |
Target: 5'- -----aGUAUAUAaCUUAGGUGUUAAa -3' miRNA: 3'- aacaaaCAUAUAUcGAAUCCACAAUU- -5' |
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28261 | 5' | -40.8 | NC_005902.1 | + | 136001 | 0.71 | 0.999998 |
Target: 5'- ---------cAUAGCUUAGGUGUUAAa -3' miRNA: 3'- aacaaacauaUAUCGAAUCCACAAUU- -5' |
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28261 | 5' | -40.8 | NC_005902.1 | + | 155244 | 0.71 | 0.999994 |
Target: 5'- -----cGUAUAUAGCUUAGaUGUUAAa -3' miRNA: 3'- aacaaaCAUAUAUCGAAUCcACAAUU- -5' |
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28261 | 5' | -40.8 | NC_005902.1 | + | 13436 | 0.71 | 0.999994 |
Target: 5'- -----aGUAUAUAGCUUAaGUGUUAAa -3' miRNA: 3'- aacaaaCAUAUAUCGAAUcCACAAUU- -5' |
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28261 | 5' | -40.8 | NC_005902.1 | + | 23449 | 0.72 | 0.999976 |
Target: 5'- -aGUgaGUAUAUAGCUUAGGUa---- -3' miRNA: 3'- aaCAaaCAUAUAUCGAAUCCAcaauu -5' |
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28261 | 5' | -40.8 | NC_005902.1 | + | 181266 | 0.72 | 0.999976 |
Target: 5'- --aUUUGUAUAUAGCgUAGG-GUUAAa -3' miRNA: 3'- aacAAACAUAUAUCGaAUCCaCAAUU- -5' |
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28261 | 5' | -40.8 | NC_005902.1 | + | 6220 | 0.72 | 0.999983 |
Target: 5'- gUUGUgaaugaGUAUAUAGCUUAGuUGUUAAa -3' miRNA: 3'- -AACAaa----CAUAUAUCGAAUCcACAAUU- -5' |
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28261 | 5' | -40.8 | NC_005902.1 | + | 156763 | 0.72 | 0.999992 |
Target: 5'- -cGUUUGUAUAUGGCUUAGa------ -3' miRNA: 3'- aaCAAACAUAUAUCGAAUCcacaauu -5' |
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28261 | 5' | -40.8 | NC_005902.1 | + | 75849 | 0.72 | 0.999976 |
Target: 5'- -cGUUUGUAUAUAGUUcAGGUaUUAAa -3' miRNA: 3'- aaCAAACAUAUAUCGAaUCCAcAAUU- -5' |
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28261 | 5' | -40.8 | NC_005902.1 | + | 137467 | 0.73 | 0.999938 |
Target: 5'- aUGUuuauUUGUGUAUAGUUUAGGUaUUAAc -3' miRNA: 3'- aACA----AACAUAUAUCGAAUCCAcAAUU- -5' |
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28261 | 5' | -40.8 | NC_005902.1 | + | 54081 | 0.73 | 0.999967 |
Target: 5'- ------aUAUAUAGUUUAGGUGUUAAc -3' miRNA: 3'- aacaaacAUAUAUCGAAUCCACAAUU- -5' |
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28261 | 5' | -40.8 | NC_005902.1 | + | 36842 | 0.73 | 0.999967 |
Target: 5'- -----aGUAUAUAGCUUAGGUaUUAAa -3' miRNA: 3'- aacaaaCAUAUAUCGAAUCCAcAAUU- -5' |
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28261 | 5' | -40.8 | NC_005902.1 | + | 32390 | 0.73 | 0.999916 |
Target: 5'- cUUGUUcGUAUAUAGUUUAaGUGUUAAa -3' miRNA: 3'- -AACAAaCAUAUAUCGAAUcCACAAUU- -5' |
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28261 | 5' | -40.8 | NC_005902.1 | + | 147629 | 0.73 | 0.999916 |
Target: 5'- -aGUgaGUGUAUAGCUUAGaUGUUAAu -3' miRNA: 3'- aaCAaaCAUAUAUCGAAUCcACAAUU- -5' |
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28261 | 5' | -40.8 | NC_005902.1 | + | 138853 | 0.74 | 0.999887 |
Target: 5'- -gGUgaGUAUAUAGCUUAaGUGUUAAa -3' miRNA: 3'- aaCAaaCAUAUAUCGAAUcCACAAUU- -5' |
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28261 | 5' | -40.8 | NC_005902.1 | + | 114290 | 0.74 | 0.999887 |
Target: 5'- -----aGUAUGUAGUgUAGGUGUUAAa -3' miRNA: 3'- aacaaaCAUAUAUCGaAUCCACAAUU- -5' |
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28261 | 5' | -40.8 | NC_005902.1 | + | 1448 | 0.74 | 0.999802 |
Target: 5'- -aGUgaGUAUAUAGCUUAaGUGUUAAa -3' miRNA: 3'- aaCAaaCAUAUAUCGAAUcCACAAUU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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