miRNA display CGI


Results 41 - 60 of 216 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28261 5' -40.8 NC_005902.1 + 146633 0.7 1
Target:  5'- -----cGUAUAUAGCUUAGGUa---- -3'
miRNA:   3'- aacaaaCAUAUAUCGAAUCCAcaauu -5'
28261 5' -40.8 NC_005902.1 + 184776 0.7 1
Target:  5'- --aUUUaUAUAUAGCcUAGGUGUUGAa -3'
miRNA:   3'- aacAAAcAUAUAUCGaAUCCACAAUU- -5'
28261 5' -40.8 NC_005902.1 + 149077 0.7 1
Target:  5'- -----aGUAUAUAGCUUAGGUa---- -3'
miRNA:   3'- aacaaaCAUAUAUCGAAUCCAcaauu -5'
28261 5' -40.8 NC_005902.1 + 16531 0.7 1
Target:  5'- ------aUAUAUAGCUcAGGUGUUAAa -3'
miRNA:   3'- aacaaacAUAUAUCGAaUCCACAAUU- -5'
28261 5' -40.8 NC_005902.1 + 142305 0.7 1
Target:  5'- uUUGUUUGUAUAUAGCUUaaauaaAGGa----- -3'
miRNA:   3'- -AACAAACAUAUAUCGAA------UCCacaauu -5'
28261 5' -40.8 NC_005902.1 + 137927 0.7 0.999999
Target:  5'- --aUUUGUAUAUAGCUUAaaUGUUAAa -3'
miRNA:   3'- aacAAACAUAUAUCGAAUccACAAUU- -5'
28261 5' -40.8 NC_005902.1 + 44043 0.7 0.999999
Target:  5'- --aUUUGUAUAUAGCUUAaaUGUUAAa -3'
miRNA:   3'- aacAAACAUAUAUCGAAUccACAAUU- -5'
28261 5' -40.8 NC_005902.1 + 31126 0.7 0.999999
Target:  5'- -----aGUAUAUAGCUUGGaUGUUAAa -3'
miRNA:   3'- aacaaaCAUAUAUCGAAUCcACAAUU- -5'
28261 5' -40.8 NC_005902.1 + 50143 0.71 0.999996
Target:  5'- cUUGUUUGUAcAUAGCUUAaaUGUUAAa -3'
miRNA:   3'- -AACAAACAUaUAUCGAAUccACAAUU- -5'
28261 5' -40.8 NC_005902.1 + 116672 0.71 0.999998
Target:  5'- -------cAUAUAGUUUAGGUGUUAAa -3'
miRNA:   3'- aacaaacaUAUAUCGAAUCCACAAUU- -5'
28261 5' -40.8 NC_005902.1 + 43773 0.71 0.999998
Target:  5'- -----aGUAUAUAGCaUAGGUGUUu- -3'
miRNA:   3'- aacaaaCAUAUAUCGaAUCCACAAuu -5'
28261 5' -40.8 NC_005902.1 + 134368 0.71 0.999994
Target:  5'- -----aGUAUAUAGCUUAaGUGUUAAa -3'
miRNA:   3'- aacaaaCAUAUAUCGAAUcCACAAUU- -5'
28261 5' -40.8 NC_005902.1 + 78240 0.71 0.999996
Target:  5'- -----aGUAUAUAGCUUAGaUGUUAAa -3'
miRNA:   3'- aacaaaCAUAUAUCGAAUCcACAAUU- -5'
28261 5' -40.8 NC_005902.1 + 13436 0.71 0.999994
Target:  5'- -----aGUAUAUAGCUUAaGUGUUAAa -3'
miRNA:   3'- aacaaaCAUAUAUCGAAUcCACAAUU- -5'
28261 5' -40.8 NC_005902.1 + 155244 0.71 0.999994
Target:  5'- -----cGUAUAUAGCUUAGaUGUUAAa -3'
miRNA:   3'- aacaaaCAUAUAUCGAAUCcACAAUU- -5'
28261 5' -40.8 NC_005902.1 + 107830 0.71 0.999994
Target:  5'- -----cGUAUAUAGCUUAGaUGUUAAa -3'
miRNA:   3'- aacaaaCAUAUAUCGAAUCcACAAUU- -5'
28261 5' -40.8 NC_005902.1 + 93877 0.71 0.999994
Target:  5'- -aGUaaGUAUAUAGCUUAGuUGUUAAa -3'
miRNA:   3'- aaCAaaCAUAUAUCGAAUCcACAAUU- -5'
28261 5' -40.8 NC_005902.1 + 122672 0.71 0.999994
Target:  5'- -aGUgaGUGUAUAGCUUAGaGaUGUUAAa -3'
miRNA:   3'- aaCAaaCAUAUAUCGAAUC-C-ACAAUU- -5'
28261 5' -40.8 NC_005902.1 + 162572 0.71 0.999994
Target:  5'- -aGUaaGUAUAUAGaUUAGGUGUUAAa -3'
miRNA:   3'- aaCAaaCAUAUAUCgAAUCCACAAUU- -5'
28261 5' -40.8 NC_005902.1 + 48608 0.71 0.999996
Target:  5'- -----aGUGUAUAGCUUAGaUGUUAAa -3'
miRNA:   3'- aacaaaCAUAUAUCGAAUCcACAAUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.