miRNA display CGI


Results 41 - 60 of 216 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28261 5' -40.8 NC_005902.1 + 142021 0.94 0.488546
Target:  5'- aUGcgUGUAUAUAGCUUAGGUGUUAAa -3'
miRNA:   3'- aACaaACAUAUAUCGAAUCCACAAUU- -5'
28261 5' -40.8 NC_005902.1 + 13226 0.79 0.98741
Target:  5'- ------aUAUAUAGCUUAGGUGUUAAa -3'
miRNA:   3'- aacaaacAUAUAUCGAAUCCACAAUU- -5'
28261 5' -40.8 NC_005902.1 + 184631 0.76 0.998658
Target:  5'- -----cGUAUAUAGCUUAGGgGUUAAa -3'
miRNA:   3'- aacaaaCAUAUAUCGAAUCCaCAAUU- -5'
28261 5' -40.8 NC_005902.1 + 95972 0.77 0.997044
Target:  5'- cUUGUuacacUUGUAUAUAaCUUAGGUGUUAAg -3'
miRNA:   3'- -AACA-----AACAUAUAUcGAAUCCACAAUU- -5'
28261 5' -40.8 NC_005902.1 + 131146 0.8 0.983516
Target:  5'- aUGUucuuUUGUAUAUAGCUUAGGUaUUAAa -3'
miRNA:   3'- aACA----AACAUAUAUCGAAUCCAcAAUU- -5'
28261 5' -40.8 NC_005902.1 + 114434 0.9 0.660461
Target:  5'- -aGUgaGUAUAUAGCUUAGGUGUUAAa -3'
miRNA:   3'- aaCAaaCAUAUAUCGAAUCCACAAUU- -5'
28261 5' -40.8 NC_005902.1 + 28810 0.94 0.477702
Target:  5'- --uUUUGUAUAUAGCUUAGGUGUUAAa -3'
miRNA:   3'- aacAAACAUAUAUCGAAUCCACAAUU- -5'
28261 5' -40.8 NC_005902.1 + 52364 0.94 0.466979
Target:  5'- --aUUUGUAUAUAGCUUAGGUGUUAAa -3'
miRNA:   3'- aacAAACAUAUAUCGAAUCCACAAUU- -5'
28261 5' -40.8 NC_005902.1 + 167185 0.87 0.773363
Target:  5'- -----cGUAUAUAGCUUAGGUGUUAAa -3'
miRNA:   3'- aacaaaCAUAUAUCGAAUCCACAAUU- -5'
28261 5' -40.8 NC_005902.1 + 5688 0.83 0.939394
Target:  5'- --aUUUGUAUAUAGCUUAGGgGUUAAa -3'
miRNA:   3'- aacAAACAUAUAUCGAAUCCaCAAUU- -5'
28261 5' -40.8 NC_005902.1 + 156822 0.84 0.901386
Target:  5'- cUUGUUcaUAUAUAGCUUAGGUGUUAAa -3'
miRNA:   3'- -AACAAacAUAUAUCGAAUCCACAAUU- -5'
28261 5' -40.8 NC_005902.1 + 165973 0.88 0.729412
Target:  5'- cUUGUUUGUAUAUGGCUUAuGUGUUAAa -3'
miRNA:   3'- -AACAAACAUAUAUCGAAUcCACAAUU- -5'
28261 5' -40.8 NC_005902.1 + 136082 0.93 0.532995
Target:  5'- cUUGUUUGUAUAUAGCUUAGGaGUUAAa -3'
miRNA:   3'- -AACAAACAUAUAUCGAAUCCaCAAUU- -5'
28261 5' -40.8 NC_005902.1 + 114834 0.78 0.991874
Target:  5'- aUGUuuauUUGUAUAUAGCUUAaGUGUUAAa -3'
miRNA:   3'- aACA----AACAUAUAUCGAAUcCACAAUU- -5'
28261 5' -40.8 NC_005902.1 + 157888 0.79 0.989069
Target:  5'- ------uUAUAUAGCUUAGGUGUUAAa -3'
miRNA:   3'- aacaaacAUAUAUCGAAUCCACAAUU- -5'
28261 5' -40.8 NC_005902.1 + 28961 0.8 0.976054
Target:  5'- ----aUGcUGUAUAGCUUAGGUGUUAAc -3'
miRNA:   3'- aacaaAC-AUAUAUCGAAUCCACAAUU- -5'
28261 5' -40.8 NC_005902.1 + 154951 0.77 0.995769
Target:  5'- ---cUUGUucAUAGCUUGGGUGUUAAa -3'
miRNA:   3'- aacaAACAuaUAUCGAAUCCACAAUU- -5'
28261 5' -40.8 NC_005902.1 + 107183 0.66 1
Target:  5'- -----aGUAUAUAGCUUaAGG-GUUAAa -3'
miRNA:   3'- aacaaaCAUAUAUCGAA-UCCaCAAUU- -5'
28261 5' -40.8 NC_005902.1 + 48602 0.76 0.998658
Target:  5'- -aGUgagUGaaUAUAUAGUUUAGGUGUUAAa -3'
miRNA:   3'- aaCAa--AC--AUAUAUCGAAUCCACAAUU- -5'
28261 5' -40.8 NC_005902.1 + 7673 0.77 0.995769
Target:  5'- aUGcUUGUAUAUAGCUUAGGUa---- -3'
miRNA:   3'- aACaAACAUAUAUCGAAUCCAcaauu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.