miRNA display CGI


Results 21 - 40 of 216 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28261 5' -40.8 NC_005902.1 + 42267 0.87 0.783974
Target:  5'- -----aGUAUAUAGCUUAGGUGUUAAa -3'
miRNA:   3'- aacaaaCAUAUAUCGAAUCCACAAUU- -5'
28261 5' -40.8 NC_005902.1 + 165973 0.88 0.729412
Target:  5'- cUUGUUUGUAUAUGGCUUAuGUGUUAAa -3'
miRNA:   3'- -AACAAACAUAUAUCGAAUcCACAAUU- -5'
28261 5' -40.8 NC_005902.1 + 99649 0.92 0.555764
Target:  5'- ---cUUGUAUAUAGCUUAGGUGUUAAa -3'
miRNA:   3'- aacaAACAUAUAUCGAAUCCACAAUU- -5'
28261 5' -40.8 NC_005902.1 + 3475 0.94 0.466979
Target:  5'- --aUUUGUAUAUAGCUUAGGUGUUAAa -3'
miRNA:   3'- aacAAACAUAUAUCGAAUCCACAAUU- -5'
28261 5' -40.8 NC_005902.1 + 50493 0.81 0.973087
Target:  5'- gUGUgUGUAUcUAGUUUAGGUGUUAAa -3'
miRNA:   3'- aACAaACAUAuAUCGAAUCCACAAUU- -5'
28261 5' -40.8 NC_005902.1 + 20319 0.84 0.901386
Target:  5'- --aUUUGUAuaUAUAGCUUAGGUGUUAAu -3'
miRNA:   3'- aacAAACAU--AUAUCGAAUCCACAAUU- -5'
28261 5' -40.8 NC_005902.1 + 63393 0.89 0.706722
Target:  5'- cUUGUUUGUAUAUAGCUUAGaUGUUAAa -3'
miRNA:   3'- -AACAAACAUAUAUCGAAUCcACAAUU- -5'
28261 5' -40.8 NC_005902.1 + 162625 1.04 0.166493
Target:  5'- cUUGUUUGUAUAUAGCUUGGGUGUUAAc -3'
miRNA:   3'- -AACAAACAUAUAUCGAAUCCACAAUU- -5'
28261 5' -40.8 NC_005902.1 + 5415 0.84 0.901386
Target:  5'- cUUGUUcaUAUAUAGCUUAGGUGUUAAa -3'
miRNA:   3'- -AACAAacAUAUAUCGAAUCCACAAUU- -5'
28261 5' -40.8 NC_005902.1 + 39301 1.05 0.139712
Target:  5'- cUUGUUUGUAUAUAGCUUAGGUGUUAAa -3'
miRNA:   3'- -AACAAACAUAUAUCGAAUCCACAAUU- -5'
28261 5' -40.8 NC_005902.1 + 97471 0.89 0.706722
Target:  5'- cUUGUUUGUAUAUAaCUUAGGUGUUAAa -3'
miRNA:   3'- -AACAAACAUAUAUcGAAUCCACAAUU- -5'
28261 5' -40.8 NC_005902.1 + 104200 0.86 0.843449
Target:  5'- uUUGUU--UAUAUAGCUUAGGUGUUAAa -3'
miRNA:   3'- -AACAAacAUAUAUCGAAUCCACAAUU- -5'
28261 5' -40.8 NC_005902.1 + 162433 0.9 0.648789
Target:  5'- ----gUGUGUAUAGCUUAGGUGUUAAa -3'
miRNA:   3'- aacaaACAUAUAUCGAAUCCACAAUU- -5'
28261 5' -40.8 NC_005902.1 + 92196 0.91 0.613718
Target:  5'- aUUGUUUGUAUAUAGCUUAGGUaUUAAa -3'
miRNA:   3'- -AACAAACAUAUAUCGAAUCCAcAAUU- -5'
28261 5' -40.8 NC_005902.1 + 80773 0.93 0.499504
Target:  5'- -aGUggGUAUAUAGCUUAGGUGUUAAa -3'
miRNA:   3'- aaCAaaCAUAUAUCGAAUCCACAAUU- -5'
28261 5' -40.8 NC_005902.1 + 52364 0.94 0.466979
Target:  5'- --aUUUGUAUAUAGCUUAGGUGUUAAa -3'
miRNA:   3'- aacAAACAUAUAUCGAAUCCACAAUU- -5'
28261 5' -40.8 NC_005902.1 + 170615 0.79 0.985563
Target:  5'- --aUUUaUAUAUAGCUUAGGUGUUAAa -3'
miRNA:   3'- aacAAAcAUAUAUCGAAUCCACAAUU- -5'
28261 5' -40.8 NC_005902.1 + 28961 0.8 0.976054
Target:  5'- ----aUGcUGUAUAGCUUAGGUGUUAAc -3'
miRNA:   3'- aacaaAC-AUAUAUCGAAUCCACAAUU- -5'
28261 5' -40.8 NC_005902.1 + 23437 0.82 0.94464
Target:  5'- cUUGUUUGUAUAUAGCUUGaauGUGUUAGc -3'
miRNA:   3'- -AACAAACAUAUAUCGAAUc--CACAAUU- -5'
28261 5' -40.8 NC_005902.1 + 156822 0.84 0.901386
Target:  5'- cUUGUUcaUAUAUAGCUUAGGUGUUAAa -3'
miRNA:   3'- -AACAAacAUAUAUCGAAUCCACAAUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.