miRNA display CGI


Results 21 - 40 of 216 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28261 5' -40.8 NC_005902.1 + 29605 1.05 0.139712
Target:  5'- cUUGUUUGUAUAUAGCUUAGGUGUUAAa -3'
miRNA:   3'- -AACAAACAUAUAUCGAAUCCACAAUU- -5'
28261 5' -40.8 NC_005902.1 + 5688 0.83 0.939394
Target:  5'- --aUUUGUAUAUAGCUUAGGgGUUAAa -3'
miRNA:   3'- aacAAACAUAUAUCGAAUCCaCAAUU- -5'
28261 5' -40.8 NC_005902.1 + 74805 0.83 0.921789
Target:  5'- aUGagUGUAuaUAUAGCUUAGGUGUUAAa -3'
miRNA:   3'- aACaaACAU--AUAUCGAAUCCACAAUU- -5'
28261 5' -40.8 NC_005902.1 + 20153 0.87 0.773363
Target:  5'- -----cGUAUAUAGCUUAGGUGUUAAa -3'
miRNA:   3'- aacaaaCAUAUAUCGAAUCCACAAUU- -5'
28261 5' -40.8 NC_005902.1 + 154619 0.9 0.6371
Target:  5'- cUUGUUUGUAUAUAGCUUAGGUaUUAAa -3'
miRNA:   3'- -AACAAACAUAUAUCGAAUCCAcAAUU- -5'
28261 5' -40.8 NC_005902.1 + 110132 0.8 0.978773
Target:  5'- cUUGcUUGUAUAUAGCUUAGGUaUUAAa -3'
miRNA:   3'- -AACaAACAUAUAUCGAAUCCAcAAUU- -5'
28261 5' -40.8 NC_005902.1 + 169577 0.81 0.962609
Target:  5'- -----aGUGUAUAGUUUAGGUGUUAAa -3'
miRNA:   3'- aacaaaCAUAUAUCGAAUCCACAAUU- -5'
28261 5' -40.8 NC_005902.1 + 45115 0.93 0.521735
Target:  5'- cUUGUUcGUAUAUAGCUUAGGUGUUAu -3'
miRNA:   3'- -AACAAaCAUAUAUCGAAUCCACAAUu -5'
28261 5' -40.8 NC_005902.1 + 54371 0.85 0.878254
Target:  5'- uUUGUguaUGUAUAGCUUAGGUGUUAAa -3'
miRNA:   3'- -AACAaacAUAUAUCGAAUCCACAAUU- -5'
28261 5' -40.8 NC_005902.1 + 42267 0.87 0.783974
Target:  5'- -----aGUAUAUAGCUUAGGUGUUAAa -3'
miRNA:   3'- aacaaaCAUAUAUCGAAUCCACAAUU- -5'
28261 5' -40.8 NC_005902.1 + 142021 0.94 0.488546
Target:  5'- aUGcgUGUAUAUAGCUUAGGUGUUAAa -3'
miRNA:   3'- aACaaACAUAUAUCGAAUCCACAAUU- -5'
28261 5' -40.8 NC_005902.1 + 28810 0.94 0.477702
Target:  5'- --uUUUGUAUAUAGCUUAGGUGUUAAa -3'
miRNA:   3'- aacAAACAUAUAUCGAAUCCACAAUU- -5'
28261 5' -40.8 NC_005902.1 + 13226 0.79 0.98741
Target:  5'- ------aUAUAUAGCUUAGGUGUUAAa -3'
miRNA:   3'- aacaaacAUAUAUCGAAUCCACAAUU- -5'
28261 5' -40.8 NC_005902.1 + 131146 0.8 0.983516
Target:  5'- aUGUucuuUUGUAUAUAGCUUAGGUaUUAAa -3'
miRNA:   3'- aACA----AACAUAUAUCGAAUCCAcAAUU- -5'
28261 5' -40.8 NC_005902.1 + 156822 0.84 0.901386
Target:  5'- cUUGUUcaUAUAUAGCUUAGGUGUUAAa -3'
miRNA:   3'- -AACAAacAUAUAUCGAAUCCACAAUU- -5'
28261 5' -40.8 NC_005902.1 + 114434 0.9 0.660461
Target:  5'- -aGUgaGUAUAUAGCUUAGGUGUUAAa -3'
miRNA:   3'- aaCAaaCAUAUAUCGAAUCCACAAUU- -5'
28261 5' -40.8 NC_005902.1 + 125569 0.9 0.6371
Target:  5'- cUUGUUUaUAUAUAGCUUAGGUGUUAAa -3'
miRNA:   3'- -AACAAAcAUAUAUCGAAUCCACAAUU- -5'
28261 5' -40.8 NC_005902.1 + 52364 0.94 0.466979
Target:  5'- --aUUUGUAUAUAGCUUAGGUGUUAAa -3'
miRNA:   3'- aacAAACAUAUAUCGAAUCCACAAUU- -5'
28261 5' -40.8 NC_005902.1 + 167185 0.87 0.773363
Target:  5'- -----cGUAUAUAGCUUAGGUGUUAAa -3'
miRNA:   3'- aacaaaCAUAUAUCGAAUCCACAAUU- -5'
28261 5' -40.8 NC_005902.1 + 3102 0.84 0.901386
Target:  5'- cUUGUUcaUAUAUAGCUUAGGUGUUAAa -3'
miRNA:   3'- -AACAAacAUAUAUCGAAUCCACAAUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.