miRNA display CGI


Results 21 - 40 of 216 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28261 5' -40.8 NC_005902.1 + 16531 0.7 1
Target:  5'- ------aUAUAUAGCUcAGGUGUUAAa -3'
miRNA:   3'- aacaaacAUAUAUCGAaUCCACAAUU- -5'
28261 5' -40.8 NC_005902.1 + 16919 0.79 0.98741
Target:  5'- ------aUAUAUAGCUUAGGUGUUAAa -3'
miRNA:   3'- aacaaacAUAUAUCGAAUCCACAAUU- -5'
28261 5' -40.8 NC_005902.1 + 18886 0.87 0.783973
Target:  5'- -----aGUAUAUAGCUUAGGUGUUAAa -3'
miRNA:   3'- aacaaaCAUAUAUCGAAUCCACAAUU- -5'
28261 5' -40.8 NC_005902.1 + 20153 0.87 0.773363
Target:  5'- -----cGUAUAUAGCUUAGGUGUUAAa -3'
miRNA:   3'- aacaaaCAUAUAUCGAAUCCACAAUU- -5'
28261 5' -40.8 NC_005902.1 + 20319 0.84 0.901386
Target:  5'- --aUUUGUAuaUAUAGCUUAGGUGUUAAu -3'
miRNA:   3'- aacAAACAU--AUAUCGAAUCCACAAUU- -5'
28261 5' -40.8 NC_005902.1 + 23437 0.82 0.94464
Target:  5'- cUUGUUUGUAUAUAGCUUGaauGUGUUAGc -3'
miRNA:   3'- -AACAAACAUAUAUCGAAUc--CACAAUU- -5'
28261 5' -40.8 NC_005902.1 + 23449 0.72 0.999976
Target:  5'- -aGUgaGUAUAUAGCUUAGGUa---- -3'
miRNA:   3'- aaCAaaCAUAUAUCGAAUCCAcaauu -5'
28261 5' -40.8 NC_005902.1 + 23505 0.76 0.997983
Target:  5'- ---gUUGUAUAUAGCUUAaGUGUUAAa -3'
miRNA:   3'- aacaAACAUAUAUCGAAUcCACAAUU- -5'
28261 5' -40.8 NC_005902.1 + 23648 0.9 0.660461
Target:  5'- -aGUgaGUAUGUAGCUUAGGUGUUAAa -3'
miRNA:   3'- aaCAaaCAUAUAUCGAAUCCACAAUU- -5'
28261 5' -40.8 NC_005902.1 + 25157 0.78 0.991874
Target:  5'- -aGUgaGUAUAUAGCUUAGGgGUUAAa -3'
miRNA:   3'- aaCAaaCAUAUAUCGAAUCCaCAAUU- -5'
28261 5' -40.8 NC_005902.1 + 27810 0.74 0.999742
Target:  5'- --aUUUGUAUAUAGCUUAGGcauuaaaggGUUAAg -3'
miRNA:   3'- aacAAACAUAUAUCGAAUCCa--------CAAUU- -5'
28261 5' -40.8 NC_005902.1 + 28192 0.79 0.98741
Target:  5'- ------aUAUAUAGCUUAGGUGUUAAa -3'
miRNA:   3'- aacaaacAUAUAUCGAAUCCACAAUU- -5'
28261 5' -40.8 NC_005902.1 + 28810 0.94 0.477702
Target:  5'- --uUUUGUAUAUAGCUUAGGUGUUAAa -3'
miRNA:   3'- aacAAACAUAUAUCGAAUCCACAAUU- -5'
28261 5' -40.8 NC_005902.1 + 28961 0.8 0.976054
Target:  5'- ----aUGcUGUAUAGCUUAGGUGUUAAc -3'
miRNA:   3'- aacaaAC-AUAUAUCGAAUCCACAAUU- -5'
28261 5' -40.8 NC_005902.1 + 29255 0.87 0.814683
Target:  5'- -----aGUAUAUAGCUUAGGUGUUAGg -3'
miRNA:   3'- aacaaaCAUAUAUCGAAUCCACAAUU- -5'
28261 5' -40.8 NC_005902.1 + 29494 0.79 0.98741
Target:  5'- ------aUAUAUAGCUUAGGUGUUAAa -3'
miRNA:   3'- aacaaacAUAUAUCGAAUCCACAAUU- -5'
28261 5' -40.8 NC_005902.1 + 29605 1.05 0.139712
Target:  5'- cUUGUUUGUAUAUAGCUUAGGUGUUAAa -3'
miRNA:   3'- -AACAAACAUAUAUCGAAUCCACAAUU- -5'
28261 5' -40.8 NC_005902.1 + 30823 0.89 0.706722
Target:  5'- cUUGUUUGUAUAUAGCUUAGaUGUUAAa -3'
miRNA:   3'- -AACAAACAUAUAUCGAAUCcACAAUU- -5'
28261 5' -40.8 NC_005902.1 + 31126 0.7 0.999999
Target:  5'- -----aGUAUAUAGCUUGGaUGUUAAa -3'
miRNA:   3'- aacaaaCAUAUAUCGAAUCcACAAUU- -5'
28261 5' -40.8 NC_005902.1 + 31455 0.75 0.999453
Target:  5'- -aGUgaGUAUAUAGCUUAGGUaaaggGUUAAa -3'
miRNA:   3'- aaCAaaCAUAUAUCGAAUCCA-----CAAUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.