miRNA display CGI


Results 21 - 40 of 216 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28261 5' -40.8 NC_005902.1 + 167185 0.87 0.773363
Target:  5'- -----cGUAUAUAGCUUAGGUGUUAAa -3'
miRNA:   3'- aacaaaCAUAUAUCGAAUCCACAAUU- -5'
28261 5' -40.8 NC_005902.1 + 165973 0.88 0.729412
Target:  5'- cUUGUUUGUAUAUGGCUUAuGUGUUAAa -3'
miRNA:   3'- -AACAAACAUAUAUCGAAUcCACAAUU- -5'
28261 5' -40.8 NC_005902.1 + 164731 0.71 0.999996
Target:  5'- -----aGUAUAUAGCUUAGaUGUUAAa -3'
miRNA:   3'- aacaaaCAUAUAUCGAAUCcACAAUU- -5'
28261 5' -40.8 NC_005902.1 + 163428 0.78 0.991874
Target:  5'- ------aUAUAUAGCUUAGGUGUUAAc -3'
miRNA:   3'- aacaaacAUAUAUCGAAUCCACAAUU- -5'
28261 5' -40.8 NC_005902.1 + 162779 0.85 0.88626
Target:  5'- gUGUgaaUAUAUAGCUUAGGUGUUAAa -3'
miRNA:   3'- aACAaacAUAUAUCGAAUCCACAAUU- -5'
28261 5' -40.8 NC_005902.1 + 162625 1.04 0.166493
Target:  5'- cUUGUUUGUAUAUAGCUUGGGUGUUAAc -3'
miRNA:   3'- -AACAAACAUAUAUCGAAUCCACAAUU- -5'
28261 5' -40.8 NC_005902.1 + 162572 0.71 0.999994
Target:  5'- -aGUaaGUAUAUAGaUUAGGUGUUAAa -3'
miRNA:   3'- aaCAaaCAUAUAUCgAAUCCACAAUU- -5'
28261 5' -40.8 NC_005902.1 + 162433 0.9 0.648789
Target:  5'- ----gUGUGUAUAGCUUAGGUGUUAAa -3'
miRNA:   3'- aacaaACAUAUAUCGAAUCCACAAUU- -5'
28261 5' -40.8 NC_005902.1 + 159543 0.76 0.998658
Target:  5'- cUUGUUUGUAUAUAGCaguUUAGaUGUUAAg -3'
miRNA:   3'- -AACAAACAUAUAUCG---AAUCcACAAUU- -5'
28261 5' -40.8 NC_005902.1 + 157888 0.79 0.989069
Target:  5'- ------uUAUAUAGCUUAGGUGUUAAa -3'
miRNA:   3'- aacaaacAUAUAUCGAAUCCACAAUU- -5'
28261 5' -40.8 NC_005902.1 + 157061 1.02 0.209311
Target:  5'- -cGUUUGUGUAUAGCUUAGGUGUUAAc -3'
miRNA:   3'- aaCAAACAUAUAUCGAAUCCACAAUU- -5'
28261 5' -40.8 NC_005902.1 + 156822 0.84 0.901386
Target:  5'- cUUGUUcaUAUAUAGCUUAGGUGUUAAa -3'
miRNA:   3'- -AACAAacAUAUAUCGAAUCCACAAUU- -5'
28261 5' -40.8 NC_005902.1 + 156763 0.72 0.999992
Target:  5'- -cGUUUGUAUAUGGCUUAGa------ -3'
miRNA:   3'- aaCAAACAUAUAUCGAAUCcacaauu -5'
28261 5' -40.8 NC_005902.1 + 156585 0.68 1
Target:  5'- cUUGUUUaUAUAUAaUUUGGGUGUUAAa -3'
miRNA:   3'- -AACAAAcAUAUAUcGAAUCCACAAUU- -5'
28261 5' -40.8 NC_005902.1 + 155244 0.71 0.999994
Target:  5'- -----cGUAUAUAGCUUAGaUGUUAAa -3'
miRNA:   3'- aacaaaCAUAUAUCGAAUCcACAAUU- -5'
28261 5' -40.8 NC_005902.1 + 154951 0.77 0.995769
Target:  5'- ---cUUGUucAUAGCUUGGGUGUUAAa -3'
miRNA:   3'- aacaAACAuaUAUCGAAUCCACAAUU- -5'
28261 5' -40.8 NC_005902.1 + 154619 0.9 0.6371
Target:  5'- cUUGUUUGUAUAUAGCUUAGGUaUUAAa -3'
miRNA:   3'- -AACAAACAUAUAUCGAAUCCAcAAUU- -5'
28261 5' -40.8 NC_005902.1 + 153062 0.83 0.921789
Target:  5'- -aGUgaGUAUAUAGUUUAGGUGUUAAc -3'
miRNA:   3'- aaCAaaCAUAUAUCGAAUCCACAAUU- -5'
28261 5' -40.8 NC_005902.1 + 151227 0.71 0.999996
Target:  5'- -----aGUAUAUAaCUUAGGUGUUAAa -3'
miRNA:   3'- aacaaaCAUAUAUcGAAUCCACAAUU- -5'
28261 5' -40.8 NC_005902.1 + 149872 0.74 0.999742
Target:  5'- cUUGUUUaUAUAUAGCUUAGaUGUUAAa -3'
miRNA:   3'- -AACAAAcAUAUAUCGAAUCcACAAUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.