miRNA display CGI


Results 1 - 20 of 216 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28261 5' -40.8 NC_005902.1 + 184889 0.8 0.976053
Target:  5'- cUUGUUUGUAUAcAGCUUAGGUcUUAAa -3'
miRNA:   3'- -AACAAACAUAUaUCGAAUCCAcAAUU- -5'
28261 5' -40.8 NC_005902.1 + 184838 0.77 0.996453
Target:  5'- --aUUUGUAUAUAaCUUAGGUGUUAAc -3'
miRNA:   3'- aacAAACAUAUAUcGAAUCCACAAUU- -5'
28261 5' -40.8 NC_005902.1 + 184776 0.7 1
Target:  5'- --aUUUaUAUAUAGCcUAGGUGUUGAa -3'
miRNA:   3'- aacAAAcAUAUAUCGaAUCCACAAUU- -5'
28261 5' -40.8 NC_005902.1 + 184631 0.76 0.998658
Target:  5'- -----cGUAUAUAGCUUAGGgGUUAAa -3'
miRNA:   3'- aacaaaCAUAUAUCGAAUCCaCAAUU- -5'
28261 5' -40.8 NC_005902.1 + 183020 0.71 0.999998
Target:  5'- -----aGUAUAUAGCUUAGaUGUUAAu -3'
miRNA:   3'- aacaaaCAUAUAUCGAAUCcACAAUU- -5'
28261 5' -40.8 NC_005902.1 + 182962 0.82 0.958559
Target:  5'- -aGUguaUAUAUAGCUUAGGUGUUAAa -3'
miRNA:   3'- aaCAaacAUAUAUCGAAUCCACAAUU- -5'
28261 5' -40.8 NC_005902.1 + 182658 0.8 0.983516
Target:  5'- aUGUUguaUGUAUAGCUUAGGUGUa-- -3'
miRNA:   3'- aACAAac-AUAUAUCGAAUCCACAauu -5'
28261 5' -40.8 NC_005902.1 + 181266 0.72 0.999976
Target:  5'- --aUUUGUAUAUAGCgUAGG-GUUAAa -3'
miRNA:   3'- aacAAACAUAUAUCGaAUCCaCAAUU- -5'
28261 5' -40.8 NC_005902.1 + 179786 0.69 1
Target:  5'- -aGUguaUAUAUGGCUUcGGUGUUAAc -3'
miRNA:   3'- aaCAaacAUAUAUCGAAuCCACAAUU- -5'
28261 5' -40.8 NC_005902.1 + 179724 0.79 0.990553
Target:  5'- --aUUUGUAUAUGGCUUAGGUcUUAAa -3'
miRNA:   3'- aacAAACAUAUAUCGAAUCCAcAAUU- -5'
28261 5' -40.8 NC_005902.1 + 178441 0.66 1
Target:  5'- -----aGUAUAUAaUUUAGGUGUUAAa -3'
miRNA:   3'- aacaaaCAUAUAUcGAAUCCACAAUU- -5'
28261 5' -40.8 NC_005902.1 + 177624 0.81 0.966374
Target:  5'- --aUUUGUAUAUAGUUUAGGUGUa-- -3'
miRNA:   3'- aacAAACAUAUAUCGAAUCCACAauu -5'
28261 5' -40.8 NC_005902.1 + 177345 0.67 1
Target:  5'- --aUUUGUAUAUAGCaUAaGUGUUAAc -3'
miRNA:   3'- aacAAACAUAUAUCGaAUcCACAAUU- -5'
28261 5' -40.8 NC_005902.1 + 174500 0.69 1
Target:  5'- uUUGUUUGUAUAUAGCUUAa------- -3'
miRNA:   3'- -AACAAACAUAUAUCGAAUccacaauu -5'
28261 5' -40.8 NC_005902.1 + 173493 0.69 1
Target:  5'- cUUGUUUGUAUAUAaUUUAGGUaUUAAa -3'
miRNA:   3'- -AACAAACAUAUAUcGAAUCCAcAAUU- -5'
28261 5' -40.8 NC_005902.1 + 172855 0.9 0.648789
Target:  5'- aUGg--GUAUAUAGCUUAGGUGUUAAa -3'
miRNA:   3'- aACaaaCAUAUAUCGAAUCCACAAUU- -5'
28261 5' -40.8 NC_005902.1 + 170615 0.79 0.985563
Target:  5'- --aUUUaUAUAUAGCUUAGGUGUUAAa -3'
miRNA:   3'- aacAAAcAUAUAUCGAAUCCACAAUU- -5'
28261 5' -40.8 NC_005902.1 + 169577 0.81 0.962609
Target:  5'- -----aGUGUAUAGUUUAGGUGUUAAa -3'
miRNA:   3'- aacaaaCAUAUAUCGAAUCCACAAUU- -5'
28261 5' -40.8 NC_005902.1 + 169147 0.83 0.91923
Target:  5'- uUUGUUUGauaugcuuacuugAUAUAGCUUAGGUGUUAAa -3'
miRNA:   3'- -AACAAACa------------UAUAUCGAAUCCACAAUU- -5'
28261 5' -40.8 NC_005902.1 + 167290 0.76 0.998658
Target:  5'- ---cUUGUAUAUAaCUUAGGUGUUAAa -3'
miRNA:   3'- aacaAACAUAUAUcGAAUCCACAAUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.