miRNA display CGI


Results 1 - 20 of 216 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28261 5' -40.8 NC_005902.1 + 116973 0.66 1
Target:  5'- -------cAUAUuaAGCUUAGGUGUUAAc -3'
miRNA:   3'- aacaaacaUAUA--UCGAAUCCACAAUU- -5'
28261 5' -40.8 NC_005902.1 + 90274 0.66 1
Target:  5'- -aGUgaaUAUAUAGCUUAaGUGUUAAa -3'
miRNA:   3'- aaCAaacAUAUAUCGAAUcCACAAUU- -5'
28261 5' -40.8 NC_005902.1 + 92325 0.66 1
Target:  5'- cUUGUUc-UAUAUAGCUUAGGUa---- -3'
miRNA:   3'- -AACAAacAUAUAUCGAAUCCAcaauu -5'
28261 5' -40.8 NC_005902.1 + 178441 0.66 1
Target:  5'- -----aGUAUAUAaUUUAGGUGUUAAa -3'
miRNA:   3'- aacaaaCAUAUAUcGAAUCCACAAUU- -5'
28261 5' -40.8 NC_005902.1 + 107183 0.66 1
Target:  5'- -----aGUAUAUAGCUUaAGG-GUUAAa -3'
miRNA:   3'- aacaaaCAUAUAUCGAA-UCCaCAAUU- -5'
28261 5' -40.8 NC_005902.1 + 40997 0.66 1
Target:  5'- -------cAUAUAGCUUAGGUGcUAAa -3'
miRNA:   3'- aacaaacaUAUAUCGAAUCCACaAUU- -5'
28261 5' -40.8 NC_005902.1 + 87103 0.67 1
Target:  5'- ------uUAUAUAGCUUAGGgGUUAAa -3'
miRNA:   3'- aacaaacAUAUAUCGAAUCCaCAAUU- -5'
28261 5' -40.8 NC_005902.1 + 177345 0.67 1
Target:  5'- --aUUUGUAUAUAGCaUAaGUGUUAAc -3'
miRNA:   3'- aacAAACAUAUAUCGaAUcCACAAUU- -5'
28261 5' -40.8 NC_005902.1 + 100421 0.67 1
Target:  5'- -aGUcaGUAUAUAGCUUaAGG-GUUAAa -3'
miRNA:   3'- aaCAaaCAUAUAUCGAA-UCCaCAAUU- -5'
28261 5' -40.8 NC_005902.1 + 3410 0.67 1
Target:  5'- cUGUUcaUAUAUAGCUUAaGUGUUAAc -3'
miRNA:   3'- aACAAacAUAUAUCGAAUcCACAAUU- -5'
28261 5' -40.8 NC_005902.1 + 109951 0.67 1
Target:  5'- -aGUgaaUAUAUAGCUUAGGUcUUAAa -3'
miRNA:   3'- aaCAaacAUAUAUCGAAUCCAcAAUU- -5'
28261 5' -40.8 NC_005902.1 + 98851 0.67 1
Target:  5'- cUUGUUUGUAUAU-GCaUAaGUGUUAAa -3'
miRNA:   3'- -AACAAACAUAUAuCGaAUcCACAAUU- -5'
28261 5' -40.8 NC_005902.1 + 94023 0.67 1
Target:  5'- aUGUUUacucaUAUAUAGCUUAGGUauuuaaaaaGUUAAa -3'
miRNA:   3'- aACAAAc----AUAUAUCGAAUCCA---------CAAUU- -5'
28261 5' -40.8 NC_005902.1 + 8444 0.67 1
Target:  5'- -----aGUAUAucaaauaaUAGUUUAGGUGUUAAa -3'
miRNA:   3'- aacaaaCAUAU--------AUCGAAUCCACAAUU- -5'
28261 5' -40.8 NC_005902.1 + 65798 0.67 1
Target:  5'- -------cAUAUAGCUcAGGUGUUAAa -3'
miRNA:   3'- aacaaacaUAUAUCGAaUCCACAAUU- -5'
28261 5' -40.8 NC_005902.1 + 142513 0.67 1
Target:  5'- --aUUUGUAUAUAGgUUAGaUGUUAAa -3'
miRNA:   3'- aacAAACAUAUAUCgAAUCcACAAUU- -5'
28261 5' -40.8 NC_005902.1 + 100130 0.68 1
Target:  5'- aUGUUcaUAUAUAGCUUAGaUGUUAAa -3'
miRNA:   3'- aACAAacAUAUAUCGAAUCcACAAUU- -5'
28261 5' -40.8 NC_005902.1 + 102302 0.68 1
Target:  5'- uUUGUUUGUAUAUcaCUUAaGUGUUAAa -3'
miRNA:   3'- -AACAAACAUAUAucGAAUcCACAAUU- -5'
28261 5' -40.8 NC_005902.1 + 139101 0.68 1
Target:  5'- aUGcUUGcAUAUAGCUUAGGUaUUAAc -3'
miRNA:   3'- aACaAACaUAUAUCGAAUCCAcAAUU- -5'
28261 5' -40.8 NC_005902.1 + 156585 0.68 1
Target:  5'- cUUGUUUaUAUAUAaUUUGGGUGUUAAa -3'
miRNA:   3'- -AACAAAcAUAUAUcGAAUCCACAAUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.