miRNA display CGI


Results 1 - 20 of 216 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28261 5' -40.8 NC_005902.1 + 1178 0.69 1
Target:  5'- ------aUAUAUacAGCUUAGGUGUUAAa -3'
miRNA:   3'- aacaaacAUAUA--UCGAAUCCACAAUU- -5'
28261 5' -40.8 NC_005902.1 + 1294 0.69 1
Target:  5'- ------aUAUAUAGCUcAGGUGUUAGg -3'
miRNA:   3'- aacaaacAUAUAUCGAaUCCACAAUU- -5'
28261 5' -40.8 NC_005902.1 + 1448 0.74 0.999802
Target:  5'- -aGUgaGUAUAUAGCUUAaGUGUUAAa -3'
miRNA:   3'- aaCAaaCAUAUAUCGAAUcCACAAUU- -5'
28261 5' -40.8 NC_005902.1 + 3102 0.84 0.901386
Target:  5'- cUUGUUcaUAUAUAGCUUAGGUGUUAAa -3'
miRNA:   3'- -AACAAacAUAUAUCGAAUCCACAAUU- -5'
28261 5' -40.8 NC_005902.1 + 3410 0.67 1
Target:  5'- cUGUUcaUAUAUAGCUUAaGUGUUAAc -3'
miRNA:   3'- aACAAacAUAUAUCGAAUcCACAAUU- -5'
28261 5' -40.8 NC_005902.1 + 3475 0.94 0.466979
Target:  5'- --aUUUGUAUAUAGCUUAGGUGUUAAa -3'
miRNA:   3'- aacAAACAUAUAUCGAAUCCACAAUU- -5'
28261 5' -40.8 NC_005902.1 + 5212 0.78 0.993044
Target:  5'- -aGUgaGUAUAUcGCUUAGGUGUUAGg -3'
miRNA:   3'- aaCAaaCAUAUAuCGAAUCCACAAUU- -5'
28261 5' -40.8 NC_005902.1 + 5415 0.84 0.901386
Target:  5'- cUUGUUcaUAUAUAGCUUAGGUGUUAAa -3'
miRNA:   3'- -AACAAacAUAUAUCGAAUCCACAAUU- -5'
28261 5' -40.8 NC_005902.1 + 5688 0.83 0.939394
Target:  5'- --aUUUGUAUAUAGCUUAGGgGUUAAa -3'
miRNA:   3'- aacAAACAUAUAUCGAAUCCaCAAUU- -5'
28261 5' -40.8 NC_005902.1 + 6220 0.72 0.999983
Target:  5'- gUUGUgaaugaGUAUAUAGCUUAGuUGUUAAa -3'
miRNA:   3'- -AACAaa----CAUAUAUCGAAUCcACAAUU- -5'
28261 5' -40.8 NC_005902.1 + 7673 0.77 0.995769
Target:  5'- aUGcUUGUAUAUAGCUUAGGUa---- -3'
miRNA:   3'- aACaAACAUAUAUCGAAUCCAcaauu -5'
28261 5' -40.8 NC_005902.1 + 8211 0.75 0.999666
Target:  5'- ---cUUGUAUAUAGCUUAGGcaaaGUUAAu -3'
miRNA:   3'- aacaAACAUAUAUCGAAUCCa---CAAUU- -5'
28261 5' -40.8 NC_005902.1 + 8444 0.67 1
Target:  5'- -----aGUAUAucaaauaaUAGUUUAGGUGUUAAa -3'
miRNA:   3'- aacaaaCAUAU--------AUCGAAUCCACAAUU- -5'
28261 5' -40.8 NC_005902.1 + 11068 0.77 0.995769
Target:  5'- --aUUUGUAUAUAGCUUAaGUGUUAGa -3'
miRNA:   3'- aacAAACAUAUAUCGAAUcCACAAUU- -5'
28261 5' -40.8 NC_005902.1 + 11449 0.87 0.804646
Target:  5'- -----cGUAUAUAGCUUAGGUGUUAAc -3'
miRNA:   3'- aacaaaCAUAUAUCGAAUCCACAAUU- -5'
28261 5' -40.8 NC_005902.1 + 13226 0.79 0.98741
Target:  5'- ------aUAUAUAGCUUAGGUGUUAAa -3'
miRNA:   3'- aacaaacAUAUAUCGAAUCCACAAUU- -5'
28261 5' -40.8 NC_005902.1 + 13436 0.71 0.999994
Target:  5'- -----aGUAUAUAGCUUAaGUGUUAAa -3'
miRNA:   3'- aacaaaCAUAUAUCGAAUcCACAAUU- -5'
28261 5' -40.8 NC_005902.1 + 15188 0.79 0.990553
Target:  5'- -aGUUUGUAUAUAGCUUAcaUGUUAAa -3'
miRNA:   3'- aaCAAACAUAUAUCGAAUccACAAUU- -5'
28261 5' -40.8 NC_005902.1 + 15341 0.79 0.98741
Target:  5'- ------aUAUAUAGCUUAGGUGUUAAa -3'
miRNA:   3'- aacaaacAUAUAUCGAAUCCACAAUU- -5'
28261 5' -40.8 NC_005902.1 + 15500 0.82 0.954218
Target:  5'- aUGUgagUGUAuaUAUAGUUUAGGUGUUAAa -3'
miRNA:   3'- aACAa--ACAU--AUAUCGAAUCCACAAUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.