miRNA display CGI


Results 1 - 20 of 216 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28261 5' -40.8 NC_005902.1 + 29605 1.05 0.139712
Target:  5'- cUUGUUUGUAUAUAGCUUAGGUGUUAAa -3'
miRNA:   3'- -AACAAACAUAUAUCGAAUCCACAAUU- -5'
28261 5' -40.8 NC_005902.1 + 63393 0.89 0.706722
Target:  5'- cUUGUUUGUAUAUAGCUUAGaUGUUAAa -3'
miRNA:   3'- -AACAAACAUAUAUCGAAUCcACAAUU- -5'
28261 5' -40.8 NC_005902.1 + 165973 0.88 0.729412
Target:  5'- cUUGUUUGUAUAUGGCUUAuGUGUUAAa -3'
miRNA:   3'- -AACAAACAUAUAUCGAAUcCACAAUU- -5'
28261 5' -40.8 NC_005902.1 + 107183 0.66 1
Target:  5'- -----aGUAUAUAGCUUaAGG-GUUAAa -3'
miRNA:   3'- aacaaaCAUAUAUCGAA-UCCaCAAUU- -5'
28261 5' -40.8 NC_005902.1 + 52364 0.94 0.466979
Target:  5'- --aUUUGUAUAUAGCUUAGGUGUUAAa -3'
miRNA:   3'- aacAAACAUAUAUCGAAUCCACAAUU- -5'
28261 5' -40.8 NC_005902.1 + 28810 0.94 0.477702
Target:  5'- --uUUUGUAUAUAGCUUAGGUGUUAAa -3'
miRNA:   3'- aacAAACAUAUAUCGAAUCCACAAUU- -5'
28261 5' -40.8 NC_005902.1 + 80773 0.93 0.499504
Target:  5'- -aGUggGUAUAUAGCUUAGGUGUUAAa -3'
miRNA:   3'- aaCAaaCAUAUAUCGAAUCCACAAUU- -5'
28261 5' -40.8 NC_005902.1 + 45115 0.93 0.521735
Target:  5'- cUUGUUcGUAUAUAGCUUAGGUGUUAu -3'
miRNA:   3'- -AACAAaCAUAUAUCGAAUCCACAAUu -5'
28261 5' -40.8 NC_005902.1 + 92196 0.91 0.613718
Target:  5'- aUUGUUUGUAUAUAGCUUAGGUaUUAAa -3'
miRNA:   3'- -AACAAACAUAUAUCGAAUCCAcAAUU- -5'
28261 5' -40.8 NC_005902.1 + 30823 0.89 0.706722
Target:  5'- cUUGUUUGUAUAUAGCUUAGaUGUUAAa -3'
miRNA:   3'- -AACAAACAUAUAUCGAAUCcACAAUU- -5'
28261 5' -40.8 NC_005902.1 + 125569 0.9 0.6371
Target:  5'- cUUGUUUaUAUAUAGCUUAGGUGUUAAa -3'
miRNA:   3'- -AACAAAcAUAUAUCGAAUCCACAAUU- -5'
28261 5' -40.8 NC_005902.1 + 99649 0.92 0.555764
Target:  5'- ---cUUGUAUAUAGCUUAGGUGUUAAa -3'
miRNA:   3'- aacaAACAUAUAUCGAAUCCACAAUU- -5'
28261 5' -40.8 NC_005902.1 + 39301 1.05 0.139712
Target:  5'- cUUGUUUGUAUAUAGCUUAGGUGUUAAa -3'
miRNA:   3'- -AACAAACAUAUAUCGAAUCCACAAUU- -5'
28261 5' -40.8 NC_005902.1 + 162433 0.9 0.648789
Target:  5'- ----gUGUGUAUAGCUUAGGUGUUAAa -3'
miRNA:   3'- aacaaACAUAUAUCGAAUCCACAAUU- -5'
28261 5' -40.8 NC_005902.1 + 162625 1.04 0.166493
Target:  5'- cUUGUUUGUAUAUAGCUUGGGUGUUAAc -3'
miRNA:   3'- -AACAAACAUAUAUCGAAUCCACAAUU- -5'
28261 5' -40.8 NC_005902.1 + 136082 0.93 0.532995
Target:  5'- cUUGUUUGUAUAUAGCUUAGGaGUUAAa -3'
miRNA:   3'- -AACAAACAUAUAUCGAAUCCaCAAUU- -5'
28261 5' -40.8 NC_005902.1 + 114434 0.9 0.660461
Target:  5'- -aGUgaGUAUAUAGCUUAGGUGUUAAa -3'
miRNA:   3'- aaCAaaCAUAUAUCGAAUCCACAAUU- -5'
28261 5' -40.8 NC_005902.1 + 97471 0.89 0.706722
Target:  5'- cUUGUUUGUAUAUAaCUUAGGUGUUAAa -3'
miRNA:   3'- -AACAAACAUAUAUcGAAUCCACAAUU- -5'
28261 5' -40.8 NC_005902.1 + 3475 0.94 0.466979
Target:  5'- --aUUUGUAUAUAGCUUAGGUGUUAAa -3'
miRNA:   3'- aacAAACAUAUAUCGAAUCCACAAUU- -5'
28261 5' -40.8 NC_005902.1 + 142021 0.94 0.488546
Target:  5'- aUGcgUGUAUAUAGCUUAGGUGUUAAa -3'
miRNA:   3'- aACaaACAUAUAUCGAAUCCACAAUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.