Results 21 - 40 of 216 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28261 | 5' | -40.8 | NC_005902.1 | + | 100130 | 0.68 | 1 |
Target: 5'- aUGUUcaUAUAUAGCUUAGaUGUUAAa -3' miRNA: 3'- aACAAacAUAUAUCGAAUCcACAAUU- -5' |
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28261 | 5' | -40.8 | NC_005902.1 | + | 139101 | 0.68 | 1 |
Target: 5'- aUGcUUGcAUAUAGCUUAGGUaUUAAc -3' miRNA: 3'- aACaAACaUAUAUCGAAUCCAcAAUU- -5' |
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28261 | 5' | -40.8 | NC_005902.1 | + | 86050 | 0.68 | 1 |
Target: 5'- aUGUUcaUAUAUAGCUUAGaUGUUAAa -3' miRNA: 3'- aACAAacAUAUAUCGAAUCcACAAUU- -5' |
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28261 | 5' | -40.8 | NC_005902.1 | + | 156585 | 0.68 | 1 |
Target: 5'- cUUGUUUaUAUAUAaUUUGGGUGUUAAa -3' miRNA: 3'- -AACAAAcAUAUAUcGAAUCCACAAUU- -5' |
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28261 | 5' | -40.8 | NC_005902.1 | + | 61647 | 0.68 | 1 |
Target: 5'- aUGaUUGaGUAUAGCUUAGaUGUUAAa -3' miRNA: 3'- aACaAACaUAUAUCGAAUCcACAAUU- -5' |
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28261 | 5' | -40.8 | NC_005902.1 | + | 1178 | 0.69 | 1 |
Target: 5'- ------aUAUAUacAGCUUAGGUGUUAAa -3' miRNA: 3'- aacaaacAUAUA--UCGAAUCCACAAUU- -5' |
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28261 | 5' | -40.8 | NC_005902.1 | + | 58259 | 0.69 | 1 |
Target: 5'- -aGUgaGUAUAUAGCUUcaGUGUUAAa -3' miRNA: 3'- aaCAaaCAUAUAUCGAAucCACAAUU- -5' |
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28261 | 5' | -40.8 | NC_005902.1 | + | 91339 | 0.69 | 1 |
Target: 5'- --aUUUGUAcAUAGCUUAGGUaUUAAg -3' miRNA: 3'- aacAAACAUaUAUCGAAUCCAcAAUU- -5' |
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28261 | 5' | -40.8 | NC_005902.1 | + | 76670 | 0.69 | 1 |
Target: 5'- -aGUUUGcuaugcuuaUAUAUAGCUUAaGUGUUAAa -3' miRNA: 3'- aaCAAAC---------AUAUAUCGAAUcCACAAUU- -5' |
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28261 | 5' | -40.8 | NC_005902.1 | + | 174500 | 0.69 | 1 |
Target: 5'- uUUGUUUGUAUAUAGCUUAa------- -3' miRNA: 3'- -AACAAACAUAUAUCGAAUccacaauu -5' |
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28261 | 5' | -40.8 | NC_005902.1 | + | 179786 | 0.69 | 1 |
Target: 5'- -aGUguaUAUAUGGCUUcGGUGUUAAc -3' miRNA: 3'- aaCAaacAUAUAUCGAAuCCACAAUU- -5' |
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28261 | 5' | -40.8 | NC_005902.1 | + | 137782 | 0.69 | 1 |
Target: 5'- aUGUguaUAUAUAGCUUAaGUGUUAAa -3' miRNA: 3'- aACAaacAUAUAUCGAAUcCACAAUU- -5' |
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28261 | 5' | -40.8 | NC_005902.1 | + | 1294 | 0.69 | 1 |
Target: 5'- ------aUAUAUAGCUcAGGUGUUAGg -3' miRNA: 3'- aacaaacAUAUAUCGAaUCCACAAUU- -5' |
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28261 | 5' | -40.8 | NC_005902.1 | + | 146763 | 0.69 | 1 |
Target: 5'- -----aGUAUAUacauGGUUUAGGUGUUAGa -3' miRNA: 3'- aacaaaCAUAUA----UCGAAUCCACAAUU- -5' |
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28261 | 5' | -40.8 | NC_005902.1 | + | 127504 | 0.69 | 1 |
Target: 5'- -aGUgaGUAUAUAGCUUcaGUGUUAAa -3' miRNA: 3'- aaCAaaCAUAUAUCGAAucCACAAUU- -5' |
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28261 | 5' | -40.8 | NC_005902.1 | + | 173493 | 0.69 | 1 |
Target: 5'- cUUGUUUGUAUAUAaUUUAGGUaUUAAa -3' miRNA: 3'- -AACAAACAUAUAUcGAAUCCAcAAUU- -5' |
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28261 | 5' | -40.8 | NC_005902.1 | + | 94729 | 0.69 | 1 |
Target: 5'- -aGUgcGUAUAUAGUUUAaGUGUUAAa -3' miRNA: 3'- aaCAaaCAUAUAUCGAAUcCACAAUU- -5' |
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28261 | 5' | -40.8 | NC_005902.1 | + | 78894 | 0.69 | 1 |
Target: 5'- cUUGUUUaUAUAUAGCUUagaGGGUGg--- -3' miRNA: 3'- -AACAAAcAUAUAUCGAA---UCCACaauu -5' |
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28261 | 5' | -40.8 | NC_005902.1 | + | 39451 | 0.7 | 0.999999 |
Target: 5'- -----aGUAUAUAGCUUAGaUGUUAGa -3' miRNA: 3'- aacaaaCAUAUAUCGAAUCcACAAUU- -5' |
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28261 | 5' | -40.8 | NC_005902.1 | + | 16531 | 0.7 | 1 |
Target: 5'- ------aUAUAUAGCUcAGGUGUUAAa -3' miRNA: 3'- aacaaacAUAUAUCGAaUCCACAAUU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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