miRNA display CGI


Results 21 - 40 of 216 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28261 5' -40.8 NC_005902.1 + 131165 0.92 0.567255
Target:  5'- gUGUUgaGUAUAUAGCUUAGGUGUUAAa -3'
miRNA:   3'- aACAAa-CAUAUAUCGAAUCCACAAUU- -5'
28261 5' -40.8 NC_005902.1 + 92196 0.91 0.613718
Target:  5'- aUUGUUUGUAUAUAGCUUAGGUaUUAAa -3'
miRNA:   3'- -AACAAACAUAUAUCGAAUCCAcAAUU- -5'
28261 5' -40.8 NC_005902.1 + 154619 0.9 0.6371
Target:  5'- cUUGUUUGUAUAUAGCUUAGGUaUUAAa -3'
miRNA:   3'- -AACAAACAUAUAUCGAAUCCAcAAUU- -5'
28261 5' -40.8 NC_005902.1 + 125569 0.9 0.6371
Target:  5'- cUUGUUUaUAUAUAGCUUAGGUGUUAAa -3'
miRNA:   3'- -AACAAAcAUAUAUCGAAUCCACAAUU- -5'
28261 5' -40.8 NC_005902.1 + 172855 0.9 0.648789
Target:  5'- aUGg--GUAUAUAGCUUAGGUGUUAAa -3'
miRNA:   3'- aACaaaCAUAUAUCGAAUCCACAAUU- -5'
28261 5' -40.8 NC_005902.1 + 162433 0.9 0.648789
Target:  5'- ----gUGUGUAUAGCUUAGGUGUUAAa -3'
miRNA:   3'- aacaaACAUAUAUCGAAUCCACAAUU- -5'
28261 5' -40.8 NC_005902.1 + 144055 0.9 0.660461
Target:  5'- -aGUgaGUAUAUAGCUUAGGUGUUAAa -3'
miRNA:   3'- aaCAaaCAUAUAUCGAAUCCACAAUU- -5'
28261 5' -40.8 NC_005902.1 + 114434 0.9 0.660461
Target:  5'- -aGUgaGUAUAUAGCUUAGGUGUUAAa -3'
miRNA:   3'- aaCAaaCAUAUAUCGAAUCCACAAUU- -5'
28261 5' -40.8 NC_005902.1 + 23648 0.9 0.660461
Target:  5'- -aGUgaGUAUGUAGCUUAGGUGUUAAa -3'
miRNA:   3'- aaCAaaCAUAUAUCGAAUCCACAAUU- -5'
28261 5' -40.8 NC_005902.1 + 117101 0.89 0.683703
Target:  5'- uUUGUUUGUAUAUAGCUUAaGUGUUAAa -3'
miRNA:   3'- -AACAAACAUAUAUCGAAUcCACAAUU- -5'
28261 5' -40.8 NC_005902.1 + 63393 0.89 0.706722
Target:  5'- cUUGUUUGUAUAUAGCUUAGaUGUUAAa -3'
miRNA:   3'- -AACAAACAUAUAUCGAAUCcACAAUU- -5'
28261 5' -40.8 NC_005902.1 + 30823 0.89 0.706722
Target:  5'- cUUGUUUGUAUAUAGCUUAGaUGUUAAa -3'
miRNA:   3'- -AACAAACAUAUAUCGAAUCcACAAUU- -5'
28261 5' -40.8 NC_005902.1 + 97471 0.89 0.706722
Target:  5'- cUUGUUUGUAUAUAaCUUAGGUGUUAAa -3'
miRNA:   3'- -AACAAACAUAUAUcGAAUCCACAAUU- -5'
28261 5' -40.8 NC_005902.1 + 165973 0.88 0.729412
Target:  5'- cUUGUUUGUAUAUGGCUUAuGUGUUAAa -3'
miRNA:   3'- -AACAAACAUAUAUCGAAUcCACAAUU- -5'
28261 5' -40.8 NC_005902.1 + 167185 0.87 0.773363
Target:  5'- -----cGUAUAUAGCUUAGGUGUUAAa -3'
miRNA:   3'- aacaaaCAUAUAUCGAAUCCACAAUU- -5'
28261 5' -40.8 NC_005902.1 + 20153 0.87 0.773363
Target:  5'- -----cGUAUAUAGCUUAGGUGUUAAa -3'
miRNA:   3'- aacaaaCAUAUAUCGAAUCCACAAUU- -5'
28261 5' -40.8 NC_005902.1 + 140958 0.87 0.773363
Target:  5'- -aGUaaGUAUAUAGCUUAGGUGUUAAa -3'
miRNA:   3'- aaCAaaCAUAUAUCGAAUCCACAAUU- -5'
28261 5' -40.8 NC_005902.1 + 86485 0.87 0.783973
Target:  5'- -----aGUAUAUAGCUUAGGUGUUAAa -3'
miRNA:   3'- aacaaaCAUAUAUCGAAUCCACAAUU- -5'
28261 5' -40.8 NC_005902.1 + 57268 0.87 0.783973
Target:  5'- -----aGUAUAUAGCUUAGGUGUUAAa -3'
miRNA:   3'- aacaaaCAUAUAUCGAAUCCACAAUU- -5'
28261 5' -40.8 NC_005902.1 + 43887 0.87 0.783973
Target:  5'- -----aGUAUAUAGCUUAGGUGUUAAa -3'
miRNA:   3'- aacaaaCAUAUAUCGAAUCCACAAUU- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.