miRNA display CGI


Results 41 - 60 of 216 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28261 5' -40.8 NC_005902.1 + 43887 0.87 0.783973
Target:  5'- -----aGUAUAUAGCUUAGGUGUUAAa -3'
miRNA:   3'- aacaaaCAUAUAUCGAAUCCACAAUU- -5'
28261 5' -40.8 NC_005902.1 + 42267 0.87 0.783974
Target:  5'- -----aGUAUAUAGCUUAGGUGUUAAa -3'
miRNA:   3'- aacaaaCAUAUAUCGAAUCCACAAUU- -5'
28261 5' -40.8 NC_005902.1 + 135926 0.87 0.804646
Target:  5'- -aGUaaGUAUGUAGCUUAGGUGUUAGg -3'
miRNA:   3'- aaCAaaCAUAUAUCGAAUCCACAAUU- -5'
28261 5' -40.8 NC_005902.1 + 11449 0.87 0.804646
Target:  5'- -----cGUAUAUAGCUUAGGUGUUAAc -3'
miRNA:   3'- aacaaaCAUAUAUCGAAUCCACAAUU- -5'
28261 5' -40.8 NC_005902.1 + 29255 0.87 0.814683
Target:  5'- -----aGUAUAUAGCUUAGGUGUUAGg -3'
miRNA:   3'- aacaaaCAUAUAUCGAAUCCACAAUU- -5'
28261 5' -40.8 NC_005902.1 + 104200 0.86 0.843449
Target:  5'- uUUGUU--UAUAUAGCUUAGGUGUUAAa -3'
miRNA:   3'- -AACAAacAUAUAUCGAAUCCACAAUU- -5'
28261 5' -40.8 NC_005902.1 + 54371 0.85 0.878254
Target:  5'- uUUGUguaUGUAUAGCUUAGGUGUUAAa -3'
miRNA:   3'- -AACAaacAUAUAUCGAAUCCACAAUU- -5'
28261 5' -40.8 NC_005902.1 + 48262 0.85 0.88626
Target:  5'- --aUUUGUAuaUAUAGCUUAGGUGUUAAa -3'
miRNA:   3'- aacAAACAU--AUAUCGAAUCCACAAUU- -5'
28261 5' -40.8 NC_005902.1 + 162779 0.85 0.88626
Target:  5'- gUGUgaaUAUAUAGCUUAGGUGUUAAa -3'
miRNA:   3'- aACAaacAUAUAUCGAAUCCACAAUU- -5'
28261 5' -40.8 NC_005902.1 + 156822 0.84 0.901386
Target:  5'- cUUGUUcaUAUAUAGCUUAGGUGUUAAa -3'
miRNA:   3'- -AACAAacAUAUAUCGAAUCCACAAUU- -5'
28261 5' -40.8 NC_005902.1 + 20319 0.84 0.901386
Target:  5'- --aUUUGUAuaUAUAGCUUAGGUGUUAAu -3'
miRNA:   3'- aacAAACAU--AUAUCGAAUCCACAAUU- -5'
28261 5' -40.8 NC_005902.1 + 5415 0.84 0.901386
Target:  5'- cUUGUUcaUAUAUAGCUUAGGUGUUAAa -3'
miRNA:   3'- -AACAAacAUAUAUCGAAUCCACAAUU- -5'
28261 5' -40.8 NC_005902.1 + 3102 0.84 0.901386
Target:  5'- cUUGUUcaUAUAUAGCUUAGGUGUUAAa -3'
miRNA:   3'- -AACAAacAUAUAUCGAAUCCACAAUU- -5'
28261 5' -40.8 NC_005902.1 + 131985 0.84 0.908495
Target:  5'- cUGUUcaUAUAUAGCUUAGGUGUUAAa -3'
miRNA:   3'- aACAAacAUAUAUCGAAUCCACAAUU- -5'
28261 5' -40.8 NC_005902.1 + 169147 0.83 0.91923
Target:  5'- uUUGUUUGauaugcuuacuugAUAUAGCUUAGGUGUUAAa -3'
miRNA:   3'- -AACAAACa------------UAUAUCGAAUCCACAAUU- -5'
28261 5' -40.8 NC_005902.1 + 74805 0.83 0.921789
Target:  5'- aUGagUGUAuaUAUAGCUUAGGUGUUAAa -3'
miRNA:   3'- aACaaACAU--AUAUCGAAUCCACAAUU- -5'
28261 5' -40.8 NC_005902.1 + 153062 0.83 0.921789
Target:  5'- -aGUgaGUAUAUAGUUUAGGUGUUAAc -3'
miRNA:   3'- aaCAaaCAUAUAUCGAAUCCACAAUU- -5'
28261 5' -40.8 NC_005902.1 + 145066 0.83 0.939393
Target:  5'- aUGUgagUGUAUAUAGCUUAGGUaUUAAa -3'
miRNA:   3'- aACAa--ACAUAUAUCGAAUCCAcAAUU- -5'
28261 5' -40.8 NC_005902.1 + 5688 0.83 0.939394
Target:  5'- --aUUUGUAUAUAGCUUAGGgGUUAAa -3'
miRNA:   3'- aacAAACAUAUAUCGAAUCCaCAAUU- -5'
28261 5' -40.8 NC_005902.1 + 97744 0.82 0.94464
Target:  5'- --aUUUGcAUAUAGCUUAGGUGUUAAu -3'
miRNA:   3'- aacAAACaUAUAUCGAAUCCACAAUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.