miRNA display CGI


Results 41 - 60 of 216 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28261 5' -40.8 NC_005902.1 + 32390 0.73 0.999916
Target:  5'- cUUGUUcGUAUAUAGUUUAaGUGUUAAa -3'
miRNA:   3'- -AACAAaCAUAUAUCGAAUcCACAAUU- -5'
28261 5' -40.8 NC_005902.1 + 34757 0.79 0.98741
Target:  5'- ------aUAUAUAGCUUAGGUGUUAAg -3'
miRNA:   3'- aacaaacAUAUAUCGAAUCCACAAUU- -5'
28261 5' -40.8 NC_005902.1 + 36842 0.73 0.999967
Target:  5'- -----aGUAUAUAGCUUAGGUaUUAAa -3'
miRNA:   3'- aacaaaCAUAUAUCGAAUCCAcAAUU- -5'
28261 5' -40.8 NC_005902.1 + 38448 0.77 0.997044
Target:  5'- --aUUUaUAUAUAGCUUAGGUGUUAc -3'
miRNA:   3'- aacAAAcAUAUAUCGAAUCCACAAUu -5'
28261 5' -40.8 NC_005902.1 + 39301 1.05 0.139712
Target:  5'- cUUGUUUGUAUAUAGCUUAGGUGUUAAa -3'
miRNA:   3'- -AACAAACAUAUAUCGAAUCCACAAUU- -5'
28261 5' -40.8 NC_005902.1 + 39451 0.7 0.999999
Target:  5'- -----aGUAUAUAGCUUAGaUGUUAGa -3'
miRNA:   3'- aacaaaCAUAUAUCGAAUCcACAAUU- -5'
28261 5' -40.8 NC_005902.1 + 39612 0.76 0.998658
Target:  5'- -----aGUGaauUAUAGCUUAGGUGUUAAa -3'
miRNA:   3'- aacaaaCAU---AUAUCGAAUCCACAAUU- -5'
28261 5' -40.8 NC_005902.1 + 40095 0.71 0.999996
Target:  5'- -----aGUAUAUAGCUUAGaUGUUAAa -3'
miRNA:   3'- aacaaaCAUAUAUCGAAUCcACAAUU- -5'
28261 5' -40.8 NC_005902.1 + 40997 0.66 1
Target:  5'- -------cAUAUAGCUUAGGUGcUAAa -3'
miRNA:   3'- aacaaacaUAUAUCGAAUCCACaAUU- -5'
28261 5' -40.8 NC_005902.1 + 42267 0.87 0.783974
Target:  5'- -----aGUAUAUAGCUUAGGUGUUAAa -3'
miRNA:   3'- aacaaaCAUAUAUCGAAUCCACAAUU- -5'
28261 5' -40.8 NC_005902.1 + 42395 0.79 0.990553
Target:  5'- -cGUUaaGUAUAUAGCUUAGGUGUc-- -3'
miRNA:   3'- aaCAAa-CAUAUAUCGAAUCCACAauu -5'
28261 5' -40.8 NC_005902.1 + 43022 0.71 0.999996
Target:  5'- -----aGUAUAUAGCUUAGaUGUUAAa -3'
miRNA:   3'- aacaaaCAUAUAUCGAAUCcACAAUU- -5'
28261 5' -40.8 NC_005902.1 + 43773 0.71 0.999998
Target:  5'- -----aGUAUAUAGCaUAGGUGUUu- -3'
miRNA:   3'- aacaaaCAUAUAUCGaAUCCACAAuu -5'
28261 5' -40.8 NC_005902.1 + 43887 0.87 0.783973
Target:  5'- -----aGUAUAUAGCUUAGGUGUUAAa -3'
miRNA:   3'- aacaaaCAUAUAUCGAAUCCACAAUU- -5'
28261 5' -40.8 NC_005902.1 + 44043 0.7 0.999999
Target:  5'- --aUUUGUAUAUAGCUUAaaUGUUAAa -3'
miRNA:   3'- aacAAACAUAUAUCGAAUccACAAUU- -5'
28261 5' -40.8 NC_005902.1 + 44103 0.68 1
Target:  5'- -aGUgaGUAUAUAGUUUAGcUGUUAAa -3'
miRNA:   3'- aaCAaaCAUAUAUCGAAUCcACAAUU- -5'
28261 5' -40.8 NC_005902.1 + 45115 0.93 0.521735
Target:  5'- cUUGUUcGUAUAUAGCUUAGGUGUUAu -3'
miRNA:   3'- -AACAAaCAUAUAUCGAAUCCACAAUu -5'
28261 5' -40.8 NC_005902.1 + 47266 0.75 0.999453
Target:  5'- --cUUUGUAUAUAGCUUAGauguuuGUGUUGAg -3'
miRNA:   3'- aacAAACAUAUAUCGAAUC------CACAAUU- -5'
28261 5' -40.8 NC_005902.1 + 48262 0.85 0.88626
Target:  5'- --aUUUGUAuaUAUAGCUUAGGUGUUAAa -3'
miRNA:   3'- aacAAACAU--AUAUCGAAUCCACAAUU- -5'
28261 5' -40.8 NC_005902.1 + 48283 0.75 0.999571
Target:  5'- uUUGUUUaUAUAUAGCUUAaGUGUUAAa -3'
miRNA:   3'- -AACAAAcAUAUAUCGAAUcCACAAUU- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.