miRNA display CGI


Results 61 - 80 of 216 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28261 5' -40.8 NC_005902.1 + 48602 0.76 0.998658
Target:  5'- -aGUgagUGaaUAUAUAGUUUAGGUGUUAAa -3'
miRNA:   3'- aaCAa--AC--AUAUAUCGAAUCCACAAUU- -5'
28261 5' -40.8 NC_005902.1 + 48608 0.71 0.999996
Target:  5'- -----aGUGUAUAGCUUAGaUGUUAAa -3'
miRNA:   3'- aacaaaCAUAUAUCGAAUCcACAAUU- -5'
28261 5' -40.8 NC_005902.1 + 49144 0.74 0.999887
Target:  5'- cUUGUUUaUAUAUAaCUUGGGUGUUAAa -3'
miRNA:   3'- -AACAAAcAUAUAUcGAAUCCACAAUU- -5'
28261 5' -40.8 NC_005902.1 + 49473 0.71 0.999996
Target:  5'- -----aGUAUAUAaCUUAGGUGUUAAa -3'
miRNA:   3'- aacaaaCAUAUAUcGAAUCCACAAUU- -5'
28261 5' -40.8 NC_005902.1 + 49991 0.77 0.995769
Target:  5'- -aGUgaGUAUAUAGCUUAGGaGUUAAa -3'
miRNA:   3'- aaCAaaCAUAUAUCGAAUCCaCAAUU- -5'
28261 5' -40.8 NC_005902.1 + 50082 0.77 0.997551
Target:  5'- ---cUUGUAUAUAGCUUAGGUaUUAAc -3'
miRNA:   3'- aacaAACAUAUAUCGAAUCCAcAAUU- -5'
28261 5' -40.8 NC_005902.1 + 50143 0.71 0.999996
Target:  5'- cUUGUUUGUAcAUAGCUUAaaUGUUAAa -3'
miRNA:   3'- -AACAAACAUaUAUCGAAUccACAAUU- -5'
28261 5' -40.8 NC_005902.1 + 50229 0.79 0.98741
Target:  5'- ------aUAUAUAGCUUAGGUGUUAAa -3'
miRNA:   3'- aacaaacAUAUAUCGAAUCCACAAUU- -5'
28261 5' -40.8 NC_005902.1 + 50493 0.81 0.973087
Target:  5'- gUGUgUGUAUcUAGUUUAGGUGUUAAa -3'
miRNA:   3'- aACAaACAUAuAUCGAAUCCACAAUU- -5'
28261 5' -40.8 NC_005902.1 + 51457 0.81 0.966374
Target:  5'- cUUGUUUGUAUAUAGCUUAaaUGUUAAa -3'
miRNA:   3'- -AACAAACAUAUAUCGAAUccACAAUU- -5'
28261 5' -40.8 NC_005902.1 + 52364 0.94 0.466979
Target:  5'- --aUUUGUAUAUAGCUUAGGUGUUAAa -3'
miRNA:   3'- aacAAACAUAUAUCGAAUCCACAAUU- -5'
28261 5' -40.8 NC_005902.1 + 52417 0.77 0.997044
Target:  5'- -aGUaUGUAUAUAGCUUAaGUGUUAAc -3'
miRNA:   3'- aaCAaACAUAUAUCGAAUcCACAAUU- -5'
28261 5' -40.8 NC_005902.1 + 54081 0.73 0.999967
Target:  5'- ------aUAUAUAGUUUAGGUGUUAAc -3'
miRNA:   3'- aacaaacAUAUAUCGAAUCCACAAUU- -5'
28261 5' -40.8 NC_005902.1 + 54371 0.85 0.878254
Target:  5'- uUUGUguaUGUAUAGCUUAGGUGUUAAa -3'
miRNA:   3'- -AACAaacAUAUAUCGAAUCCACAAUU- -5'
28261 5' -40.8 NC_005902.1 + 57268 0.87 0.783973
Target:  5'- -----aGUAUAUAGCUUAGGUGUUAAa -3'
miRNA:   3'- aacaaaCAUAUAUCGAAUCCACAAUU- -5'
28261 5' -40.8 NC_005902.1 + 58259 0.69 1
Target:  5'- -aGUgaGUAUAUAGCUUcaGUGUUAAa -3'
miRNA:   3'- aaCAaaCAUAUAUCGAAucCACAAUU- -5'
28261 5' -40.8 NC_005902.1 + 61647 0.68 1
Target:  5'- aUGaUUGaGUAUAGCUUAGaUGUUAAa -3'
miRNA:   3'- aACaAACaUAUAUCGAAUCcACAAUU- -5'
28261 5' -40.8 NC_005902.1 + 63393 0.89 0.706722
Target:  5'- cUUGUUUGUAUAUAGCUUAGaUGUUAAa -3'
miRNA:   3'- -AACAAACAUAUAUCGAAUCcACAAUU- -5'
28261 5' -40.8 NC_005902.1 + 65798 0.67 1
Target:  5'- -------cAUAUAGCUcAGGUGUUAAa -3'
miRNA:   3'- aacaaacaUAUAUCGAaUCCACAAUU- -5'
28261 5' -40.8 NC_005902.1 + 67032 0.75 0.999571
Target:  5'- -----aGUAUAUAGCUUAGGaGUUAAa -3'
miRNA:   3'- aacaaaCAUAUAUCGAAUCCaCAAUU- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.