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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
28263 | 5' | -51 | NC_005902.1 | + | 112674 | 0.67 | 0.99179 |
Target: 5'- ----aUCCUGG-UCAUCAaGGAauaagaGGACCu -3' miRNA: 3'- aaauaAGGACCuAGUGGU-CCU------CCUGG- -5' |
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28263 | 5' | -51 | NC_005902.1 | + | 72701 | 0.68 | 0.979673 |
Target: 5'- ----cUCCagGGAgaccauuuuuaccaUCuauACCAGGAGGACCc -3' miRNA: 3'- aaauaAGGa-CCU--------------AG---UGGUCCUCCUGG- -5' |
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28263 | 5' | -51 | NC_005902.1 | + | 73278 | 0.7 | 0.933276 |
Target: 5'- ---cUUCCaGGGUCACCAGGcauuccAGGAgCu -3' miRNA: 3'- aaauAAGGaCCUAGUGGUCC------UCCUgG- -5' |
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28263 | 5' | -51 | NC_005902.1 | + | 72890 | 0.74 | 0.782614 |
Target: 5'- -----aCCaGGAaUACCAGGAGGACCn -3' miRNA: 3'- aaauaaGGaCCUaGUGGUCCUCCUGG- -5' |
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28263 | 5' | -51 | NC_005902.1 | + | 73371 | 0.77 | 0.671567 |
Target: 5'- cUUAUUCCUugaugaccaGGAUUACCAGGcucacccauAGGGCCu -3' miRNA: 3'- aAAUAAGGA---------CCUAGUGGUCC---------UCCUGG- -5' |
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28263 | 5' | -51 | NC_005902.1 | + | 72666 | 0.78 | 0.618931 |
Target: 5'- -----aCCaGGAggACCAGGAGGACCa -3' miRNA: 3'- aaauaaGGaCCUagUGGUCCUCCUGG- -5' |
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28263 | 5' | -51 | NC_005902.1 | + | 72911 | 1.1 | 0.008017 |
Target: 5'- aUUUAUUCCUGGAUCACCAGGAGGACCu -3' miRNA: 3'- -AAAUAAGGACCUAGUGGUCCUCCUGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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