miRNA display CGI


Results 1 - 4 of 4 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28264 5' -43.3 NC_005902.1 + 125013 0.73 0.998717
Target:  5'- -----aAAUCCUgguugUGGAGUGCCUc- -3'
miRNA:   3'- ccuuuaUUAGGAaa---ACCUCACGGAaa -5'
28264 5' -43.3 NC_005902.1 + 124947 0.74 0.996709
Target:  5'- aGAAuuaAAUCCUgguugUGGAGUGCCUc- -3'
miRNA:   3'- cCUUua-UUAGGAaa---ACCUCACGGAaa -5'
28264 5' -43.3 NC_005902.1 + 61001 1.05 0.091371
Target:  5'- uGGAAAUAAUCCUUUUGGAGUGCCUc- -3'
miRNA:   3'- -CCUUUAUUAGGAAAACCUCACGGAaa -5'
28264 5' -43.3 NC_005902.1 + 61061 1.1 0.049233
Target:  5'- uGGAAAUAAUCCUUUUGGAGUGCCUUUg -3'
miRNA:   3'- -CCUUUAUUAGGAAAACCUCACGGAAA- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.