miRNA display CGI


Results 61 - 80 of 126 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28266 5' -42.9 NC_005902.1 + 182606 0.73 0.998903
Target:  5'- aAUAUAAGgCUUAGuuUUUAAAGGGUu -3'
miRNA:   3'- -UAUAUUCgGAAUCcuAAAUUUCCCAu -5'
28266 5' -42.9 NC_005902.1 + 27846 0.73 0.998756
Target:  5'- uAUAUGAGUgaacacagcaaacaUUAGGAUUUAAAGGGUu -3'
miRNA:   3'- -UAUAUUCGg-------------AAUCCUAAAUUUCCCAu -5'
28266 5' -42.9 NC_005902.1 + 122804 0.74 0.997988
Target:  5'- aGUAUAuAG-CUUAGGggUUAAAGGGUAa -3'
miRNA:   3'- -UAUAU-UCgGAAUCCuaAAUUUCCCAU- -5'
28266 5' -42.9 NC_005902.1 + 67028 0.74 0.997988
Target:  5'- -aAUGAGUauauagCUUAGGAgUUAAAGGGUAu -3'
miRNA:   3'- uaUAUUCG------GAAUCCUaAAUUUCCCAU- -5'
28266 5' -42.9 NC_005902.1 + 173379 0.74 0.996503
Target:  5'- uUGUAuGUCUUAaGAUUUAAAGGGUAa -3'
miRNA:   3'- uAUAUuCGGAAUcCUAAAUUUCCCAU- -5'
28266 5' -42.9 NC_005902.1 + 136161 0.75 0.995083
Target:  5'- -gAUAAuGCUUUAGGAaUUAAAGGGUu -3'
miRNA:   3'- uaUAUU-CGGAAUCCUaAAUUUCCCAu -5'
28266 5' -42.9 NC_005902.1 + 15403 0.75 0.994214
Target:  5'- aGUGUAAGCCUUAGGGUUUAAc----- -3'
miRNA:   3'- -UAUAUUCGGAAUCCUAAAUUucccau -5'
28266 5' -42.9 NC_005902.1 + 170174 0.75 0.993226
Target:  5'- cAUAUAAaCCUUAGaAUUUAAAGGGUAa -3'
miRNA:   3'- -UAUAUUcGGAAUCcUAAAUUUCCCAU- -5'
28266 5' -42.9 NC_005902.1 + 75977 0.76 0.990847
Target:  5'- aGUAUAAGUUUUAuGAUUUAAAGGGUu -3'
miRNA:   3'- -UAUAUUCGGAAUcCUAAAUUUCCCAu -5'
28266 5' -42.9 NC_005902.1 + 85659 0.76 0.987688
Target:  5'- cAUAUAAGCCUUAGGAUUUAacccuuuacucuuAAGGc-- -3'
miRNA:   3'- -UAUAUUCGGAAUCCUAAAU-------------UUCCcau -5'
28266 5' -42.9 NC_005902.1 + 135669 0.77 0.982016
Target:  5'- uAUAUGAGUgaaugUUAGGAUUUAAAGGGUu -3'
miRNA:   3'- -UAUAUUCGg----AAUCCUAAAUUUCCCAu -5'
28266 5' -42.9 NC_005902.1 + 130915 0.77 0.982016
Target:  5'- uUAUA-G-CUUAGGAUUUAAAGGGUAc -3'
miRNA:   3'- uAUAUuCgGAAUCCUAAAUUUCCCAU- -5'
28266 5' -42.9 NC_005902.1 + 69159 0.77 0.979663
Target:  5'- uUGUAuAGUCUUAGGAaUUAAAGGGUu -3'
miRNA:   3'- uAUAU-UCGGAAUCCUaAAUUUCCCAu -5'
28266 5' -42.9 NC_005902.1 + 143513 0.77 0.979663
Target:  5'- aGUGU-AGCaaacgUUAGGAUUUAAAGGGUAa -3'
miRNA:   3'- -UAUAuUCGg----AAUCCUAAAUUUCCCAU- -5'
28266 5' -42.9 NC_005902.1 + 8673 0.78 0.967935
Target:  5'- uGUAUAAGCCaUAaGAUUUAAAGGGUu -3'
miRNA:   3'- -UAUAUUCGGaAUcCUAAAUUUCCCAu -5'
28266 5' -42.9 NC_005902.1 + 152959 0.78 0.967244
Target:  5'- uAUAUAAGCCUUAGGAUUUAAAagauuaacucaaGGUAu -3'
miRNA:   3'- -UAUAUUCGGAAUCCUAAAUUUc-----------CCAU- -5'
28266 5' -42.9 NC_005902.1 + 177411 0.78 0.964376
Target:  5'- aGUAUAAGCCaUAaGAUUUAAAGGGUu -3'
miRNA:   3'- -UAUAUUCGGaAUcCUAAAUUUCCCAu -5'
28266 5' -42.9 NC_005902.1 + 12702 0.78 0.964376
Target:  5'- aGUAUAAGCCUUAaGAUUUAAcGGGUu -3'
miRNA:   3'- -UAUAUUCGGAAUcCUAAAUUuCCCAu -5'
28266 5' -42.9 NC_005902.1 + 167346 0.79 0.952065
Target:  5'- -aAUGAuGCUUUAGGAaUUAAAGGGUAa -3'
miRNA:   3'- uaUAUU-CGGAAUCCUaAAUUUCCCAU- -5'
28266 5' -42.9 NC_005902.1 + 159836 0.8 0.919633
Target:  5'- -aAUGAuGCCUUAGGAgUUAAGGGGUu -3'
miRNA:   3'- uaUAUU-CGGAAUCCUaAAUUUCCCAu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.