miRNA display CGI


Results 41 - 60 of 126 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28266 5' -42.9 NC_005902.1 + 139054 0.7 0.999973
Target:  5'- uGUAUAAGCCUUAaGAUUUAAAGa--- -3'
miRNA:   3'- -UAUAUUCGGAAUcCUAAAUUUCccau -5'
28266 5' -42.9 NC_005902.1 + 127510 0.7 0.999963
Target:  5'- aAUGUGAGCaaucAGGAagucUUAAAGGGUAa -3'
miRNA:   3'- -UAUAUUCGgaa-UCCUa---AAUUUCCCAU- -5'
28266 5' -42.9 NC_005902.1 + 110018 0.7 0.99995
Target:  5'- -gAUAAuaCCUUAGGAgUUAAAGGGUu -3'
miRNA:   3'- uaUAUUc-GGAAUCCUaAAUUUCCCAu -5'
28266 5' -42.9 NC_005902.1 + 88603 0.7 0.99995
Target:  5'- -aGUAAGUauagCUUAGGugUUAAAGGGUAa -3'
miRNA:   3'- uaUAUUCG----GAAUCCuaAAUUUCCCAU- -5'
28266 5' -42.9 NC_005902.1 + 151410 0.7 0.99995
Target:  5'- uAUAUAAaCCUUGGaAUUUAAAGGGUu -3'
miRNA:   3'- -UAUAUUcGGAAUCcUAAAUUUCCCAu -5'
28266 5' -42.9 NC_005902.1 + 145065 0.7 0.99995
Target:  5'- uAUGUGAGUguauauagCUUAGGuaUUAAAGGGUGa -3'
miRNA:   3'- -UAUAUUCG--------GAAUCCuaAAUUUCCCAU- -5'
28266 5' -42.9 NC_005902.1 + 160978 0.7 0.999932
Target:  5'- -----cGCUUUAGGAgUUAAAGGGg- -3'
miRNA:   3'- uauauuCGGAAUCCUaAAUUUCCCau -5'
28266 5' -42.9 NC_005902.1 + 10103 0.7 0.999932
Target:  5'- -gAUGAuaCCUUAGGAgUUAAAGGGUu -3'
miRNA:   3'- uaUAUUc-GGAAUCCUaAAUUUCCCAu -5'
28266 5' -42.9 NC_005902.1 + 49991 0.71 0.999908
Target:  5'- -aGUGAGUauauagCUUAGGAgUUAAAGGGUu -3'
miRNA:   3'- uaUAUUCG------GAAUCCUaAAUUUCCCAu -5'
28266 5' -42.9 NC_005902.1 + 37902 0.71 0.99984
Target:  5'- ----cAGCUUUAGGAUUUAGAGaGUAa -3'
miRNA:   3'- uauauUCGGAAUCCUAAAUUUCcCAU- -5'
28266 5' -42.9 NC_005902.1 + 31325 0.71 0.99984
Target:  5'- uGUAUAAGCUUUAGGAUUUAAGc---- -3'
miRNA:   3'- -UAUAUUCGGAAUCCUAAAUUUcccau -5'
28266 5' -42.9 NC_005902.1 + 68104 0.71 0.99984
Target:  5'- -aGUAAGCauauaaCUUAGGuggUAGAGGGUAa -3'
miRNA:   3'- uaUAUUCG------GAAUCCuaaAUUUCCCAU- -5'
28266 5' -42.9 NC_005902.1 + 99702 0.71 0.99984
Target:  5'- -gAUGAcGCCUUAGGAaUUAAAGGa-- -3'
miRNA:   3'- uaUAUU-CGGAAUCCUaAAUUUCCcau -5'
28266 5' -42.9 NC_005902.1 + 48475 0.72 0.999729
Target:  5'- uAUAUAAGCUUUAGGAUUcAAAaGGUu -3'
miRNA:   3'- -UAUAUUCGGAAUCCUAAaUUUcCCAu -5'
28266 5' -42.9 NC_005902.1 + 149802 0.72 0.999729
Target:  5'- aGUAUAAGCCUUAaGAUUUAAAGaGUu -3'
miRNA:   3'- -UAUAUUCGGAAUcCUAAAUUUCcCAu -5'
28266 5' -42.9 NC_005902.1 + 71302 0.72 0.999729
Target:  5'- -aAUGAuGCCUUGGGAguu-AGGGGUu -3'
miRNA:   3'- uaUAUU-CGGAAUCCUaaauUUCCCAu -5'
28266 5' -42.9 NC_005902.1 + 103928 0.72 0.999651
Target:  5'- uAUAUAAGCCUUAGGAUUgaaaacugAAAGauuGUAa -3'
miRNA:   3'- -UAUAUUCGGAAUCCUAAa-------UUUCc--CAU- -5'
28266 5' -42.9 NC_005902.1 + 136088 0.72 0.999291
Target:  5'- uGUAUAuAG-CUUAGGAgUUAAAGGGUAu -3'
miRNA:   3'- -UAUAU-UCgGAAUCCUaAAUUUCCCAU- -5'
28266 5' -42.9 NC_005902.1 + 148162 0.73 0.999115
Target:  5'- cUGUAAGUgcagcgaaugC-UAGGAUUUAAAGGGUAa -3'
miRNA:   3'- uAUAUUCG----------GaAUCCUAAAUUUCCCAU- -5'
28266 5' -42.9 NC_005902.1 + 94974 0.73 0.999115
Target:  5'- -aAUAAuGCCUUAGGAguu-AAGGGUu -3'
miRNA:   3'- uaUAUU-CGGAAUCCUaaauUUCCCAu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.