miRNA display CGI


Results 41 - 60 of 126 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28266 5' -42.9 NC_005902.1 + 61563 0.68 0.999997
Target:  5'- -----uGCCUUAGGAgu--GGGGGUu -3'
miRNA:   3'- uauauuCGGAAUCCUaaauUUCCCAu -5'
28266 5' -42.9 NC_005902.1 + 63187 0.91 0.473948
Target:  5'- aAUAUAAGCCUUAGGAUUUAAAaGGUAc -3'
miRNA:   3'- -UAUAUUCGGAAUCCUAAAUUUcCCAU- -5'
28266 5' -42.9 NC_005902.1 + 65669 1.01 0.142558
Target:  5'- aGUAUAAGCCUUAGGAUUUAAAGGGg- -3'
miRNA:   3'- -UAUAUUCGGAAUCCUAAAUUUCCCau -5'
28266 5' -42.9 NC_005902.1 + 67028 0.74 0.997988
Target:  5'- -aAUGAGUauauagCUUAGGAgUUAAAGGGUAu -3'
miRNA:   3'- uaUAUUCG------GAAUCCUaAAUUUCCCAU- -5'
28266 5' -42.9 NC_005902.1 + 67467 0.68 0.999998
Target:  5'- -aAUGAuGCCUUAGaagUUAAAGGGUu -3'
miRNA:   3'- uaUAUU-CGGAAUCcuaAAUUUCCCAu -5'
28266 5' -42.9 NC_005902.1 + 68104 0.71 0.99984
Target:  5'- -aGUAAGCauauaaCUUAGGuggUAGAGGGUAa -3'
miRNA:   3'- uaUAUUCG------GAAUCCuaaAUUUCCCAU- -5'
28266 5' -42.9 NC_005902.1 + 69038 0.67 0.999999
Target:  5'- uGUAUAAGaCUUAGGAaUUAAAuGGUAu -3'
miRNA:   3'- -UAUAUUCgGAAUCCUaAAUUUcCCAU- -5'
28266 5' -42.9 NC_005902.1 + 69159 0.77 0.979663
Target:  5'- uUGUAuAGUCUUAGGAaUUAAAGGGUu -3'
miRNA:   3'- uAUAU-UCGGAAUCCUaAAUUUCCCAu -5'
28266 5' -42.9 NC_005902.1 + 69266 0.9 0.516825
Target:  5'- uAUAUAAGCCUUAGaAUUUAAAGGGUGa -3'
miRNA:   3'- -UAUAUUCGGAAUCcUAAAUUUCCCAU- -5'
28266 5' -42.9 NC_005902.1 + 69283 0.69 0.99999
Target:  5'- -aAUGAuGUUUUAGGAgUUAAAGGGUu -3'
miRNA:   3'- uaUAUU-CGGAAUCCUaAAUUUCCCAu -5'
28266 5' -42.9 NC_005902.1 + 71302 0.72 0.999729
Target:  5'- -aAUGAuGCCUUGGGAguu-AGGGGUu -3'
miRNA:   3'- uaUAUU-CGGAAUCCUaaauUUCCCAu -5'
28266 5' -42.9 NC_005902.1 + 71393 0.67 1
Target:  5'- -aGUAccaCCUUAGGAUUUAAAaGGUAa -3'
miRNA:   3'- uaUAUuc-GGAAUCCUAAAUUUcCCAU- -5'
28266 5' -42.9 NC_005902.1 + 75878 0.81 0.89209
Target:  5'- -----uGCCUUAGGAaUUAAAGGGUAu -3'
miRNA:   3'- uauauuCGGAAUCCUaAAUUUCCCAU- -5'
28266 5' -42.9 NC_005902.1 + 75977 0.76 0.990847
Target:  5'- aGUAUAAGUUUUAuGAUUUAAAGGGUu -3'
miRNA:   3'- -UAUAUUCGGAAUcCUAAAUUUCCCAu -5'
28266 5' -42.9 NC_005902.1 + 76245 0.66 1
Target:  5'- aAUAUAuaaCUUAGGugUUAAAGGGUGa -3'
miRNA:   3'- -UAUAUucgGAAUCCuaAAUUUCCCAU- -5'
28266 5' -42.9 NC_005902.1 + 78669 0.93 0.357513
Target:  5'- aGUAUAAGCCcUAGGAUUUAAAGGGUu -3'
miRNA:   3'- -UAUAUUCGGaAUCCUAAAUUUCCCAu -5'
28266 5' -42.9 NC_005902.1 + 80769 0.67 0.999999
Target:  5'- -aGUGAGUggguauauagCUUAGGugUUAAAGGGUAa -3'
miRNA:   3'- uaUAUUCG----------GAAUCCuaAAUUUCCCAU- -5'
28266 5' -42.9 NC_005902.1 + 81139 0.67 1
Target:  5'- aAUAcAAcCCUUAGGAUUUAAAGGa-- -3'
miRNA:   3'- -UAUaUUcGGAAUCCUAAAUUUCCcau -5'
28266 5' -42.9 NC_005902.1 + 82155 0.86 0.708771
Target:  5'- gGUAUAAaCUUUAGGAUUUAAAGGGUAa -3'
miRNA:   3'- -UAUAUUcGGAAUCCUAAAUUUCCCAU- -5'
28266 5' -42.9 NC_005902.1 + 85659 0.76 0.987688
Target:  5'- cAUAUAAGCCUUAGGAUUUAacccuuuacucuuAAGGc-- -3'
miRNA:   3'- -UAUAUUCGGAAUCCUAAAU-------------UUCCcau -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.