miRNA display CGI


Results 21 - 40 of 126 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28266 5' -42.9 NC_005902.1 + 36205 0.67 1
Target:  5'- aGUAUAAGCUUUAGG---UAAAGGa-- -3'
miRNA:   3'- -UAUAUUCGGAAUCCuaaAUUUCCcau -5'
28266 5' -42.9 NC_005902.1 + 36351 0.69 0.999993
Target:  5'- -gAUAAccCCUUAGGAgUUAAGGGGUu -3'
miRNA:   3'- uaUAUUc-GGAAUCCUaAAUUUCCCAu -5'
28266 5' -42.9 NC_005902.1 + 37902 0.71 0.99984
Target:  5'- ----cAGCUUUAGGAUUUAGAGaGUAa -3'
miRNA:   3'- uauauUCGGAAUCCUAAAUUUCcCAU- -5'
28266 5' -42.9 NC_005902.1 + 42263 0.67 0.999999
Target:  5'- -aAUGAGUauauagCUUAGGugUUAAAGGGUAu -3'
miRNA:   3'- uaUAUUCG------GAAUCCuaAAUUUCCCAU- -5'
28266 5' -42.9 NC_005902.1 + 42274 0.68 0.999997
Target:  5'- uGUAUAAGCCUUAGGAcUUAaccccuuaacucAAGGc-- -3'
miRNA:   3'- -UAUAUUCGGAAUCCUaAAU------------UUCCcau -5'
28266 5' -42.9 NC_005902.1 + 42558 1.06 0.074697
Target:  5'- cAUAUAAGCCUUAGGAUUUAAAGGGUAa -3'
miRNA:   3'- -UAUAUUCGGAAUCCUAAAUUUCCCAU- -5'
28266 5' -42.9 NC_005902.1 + 43834 0.93 0.384695
Target:  5'- ---cAAGCCUUAGGAUUUAAAGGGUu -3'
miRNA:   3'- uauaUUCGGAAUCCUAAAUUUCCCAu -5'
28266 5' -42.9 NC_005902.1 + 46298 0.93 0.384695
Target:  5'- aGUAUAAGCCUUAGGAUUUAAAGGa-- -3'
miRNA:   3'- -UAUAUUCGGAAUCCUAAAUUUCCcau -5'
28266 5' -42.9 NC_005902.1 + 46478 0.81 0.898694
Target:  5'- uAUAUAAGCCUUAGGGUUUAAcuccaaauguauuAGuGGUGa -3'
miRNA:   3'- -UAUAUUCGGAAUCCUAAAUU-------------UC-CCAU- -5'
28266 5' -42.9 NC_005902.1 + 48208 0.69 0.999981
Target:  5'- -gAUGAcGCCUUAGGAgcUAAAGGa-- -3'
miRNA:   3'- uaUAUU-CGGAAUCCUaaAUUUCCcau -5'
28266 5' -42.9 NC_005902.1 + 48475 0.72 0.999729
Target:  5'- uAUAUAAGCUUUAGGAUUcAAAaGGUu -3'
miRNA:   3'- -UAUAUUCGGAAUCCUAAaUUUcCCAu -5'
28266 5' -42.9 NC_005902.1 + 49039 0.7 0.999973
Target:  5'- ---aAAGCUcUAGGAgUUAAGGGGUu -3'
miRNA:   3'- uauaUUCGGaAUCCUaAAUUUCCCAu -5'
28266 5' -42.9 NC_005902.1 + 49630 0.94 0.340154
Target:  5'- uAUAUAAGCCUUAGGggUUAAAGGGUu -3'
miRNA:   3'- -UAUAUUCGGAAUCCuaAAUUUCCCAu -5'
28266 5' -42.9 NC_005902.1 + 49991 0.71 0.999908
Target:  5'- -aGUGAGUauauagCUUAGGAgUUAAAGGGUu -3'
miRNA:   3'- uaUAUUCG------GAAUCCUaAAUUUCCCAu -5'
28266 5' -42.9 NC_005902.1 + 50392 1.02 0.127004
Target:  5'- cAUAUAAGCCUUAGGAUUUAAAGGGUu -3'
miRNA:   3'- -UAUAUUCGGAAUCCUAAAUUUCCCAu -5'
28266 5' -42.9 NC_005902.1 + 52206 0.67 1
Target:  5'- gGUAUAucaCUUAGGugUUAAAGGGUGa -3'
miRNA:   3'- -UAUAUucgGAAUCCuaAAUUUCCCAU- -5'
28266 5' -42.9 NC_005902.1 + 52480 0.93 0.384695
Target:  5'- aAUAUAAGCCcUAGGAUUUAAAGGGUu -3'
miRNA:   3'- -UAUAUUCGGaAUCCUAAAUUUCCCAu -5'
28266 5' -42.9 NC_005902.1 + 55098 1.01 0.150973
Target:  5'- aGUAUAAGCUUUAGGAUUUAAAGGGUAa -3'
miRNA:   3'- -UAUAUUCGGAAUCCUAAAUUUCCCAU- -5'
28266 5' -42.9 NC_005902.1 + 55231 0.68 0.999997
Target:  5'- -gAUGAcGCCUUAGaagUUAAAGGGUu -3'
miRNA:   3'- uaUAUU-CGGAAUCcuaAAUUUCCCAu -5'
28266 5' -42.9 NC_005902.1 + 57268 0.66 1
Target:  5'- aGUAUAuAG-CUUAGGugUUAAAGGGUAu -3'
miRNA:   3'- -UAUAU-UCgGAAUCCuaAAUUUCCCAU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.