miRNA display CGI


Results 21 - 40 of 126 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28266 5' -42.9 NC_005902.1 + 36205 0.67 1
Target:  5'- aGUAUAAGCUUUAGG---UAAAGGa-- -3'
miRNA:   3'- -UAUAUUCGGAAUCCuaaAUUUCCcau -5'
28266 5' -42.9 NC_005902.1 + 1760 0.67 1
Target:  5'- uAUAUAAGCUUUAuGGAUUaAAAGGuGa- -3'
miRNA:   3'- -UAUAUUCGGAAU-CCUAAaUUUCC-Cau -5'
28266 5' -42.9 NC_005902.1 + 87103 0.67 0.999999
Target:  5'- uUAUAuAG-CUUAGGggUUAAAGGGUu -3'
miRNA:   3'- uAUAU-UCgGAAUCCuaAAUUUCCCAu -5'
28266 5' -42.9 NC_005902.1 + 170245 0.67 0.999999
Target:  5'- -----uGCCUUAGGAgUUAAAGGa-- -3'
miRNA:   3'- uauauuCGGAAUCCUaAAUUUCCcau -5'
28266 5' -42.9 NC_005902.1 + 104046 0.68 0.999997
Target:  5'- -aAUAAcaCCUUAGGAUUUAAAGGa-- -3'
miRNA:   3'- uaUAUUc-GGAAUCCUAAAUUUCCcau -5'
28266 5' -42.9 NC_005902.1 + 61563 0.68 0.999997
Target:  5'- -----uGCCUUAGGAgu--GGGGGUu -3'
miRNA:   3'- uauauuCGGAAUCCUaaauUUCCCAu -5'
28266 5' -42.9 NC_005902.1 + 42274 0.68 0.999997
Target:  5'- uGUAUAAGCCUUAGGAcUUAaccccuuaacucAAGGc-- -3'
miRNA:   3'- -UAUAUUCGGAAUCCUaAAU------------UUCCcau -5'
28266 5' -42.9 NC_005902.1 + 55231 0.68 0.999997
Target:  5'- -gAUGAcGCCUUAGaagUUAAAGGGUu -3'
miRNA:   3'- uaUAUU-CGGAAUCcuaAAUUUCCCAu -5'
28266 5' -42.9 NC_005902.1 + 14903 0.68 0.999998
Target:  5'- uAUAUAAGCCUUAaaAUUUAAAGGa-- -3'
miRNA:   3'- -UAUAUUCGGAAUccUAAAUUUCCcau -5'
28266 5' -42.9 NC_005902.1 + 113117 0.68 0.999995
Target:  5'- aGUAUAAGCCUUAaGGUUUAAAGa--- -3'
miRNA:   3'- -UAUAUUCGGAAUcCUAAAUUUCccau -5'
28266 5' -42.9 NC_005902.1 + 67467 0.68 0.999998
Target:  5'- -aAUGAuGCCUUAGaagUUAAAGGGUu -3'
miRNA:   3'- uaUAUU-CGGAAUCcuaAAUUUCCCAu -5'
28266 5' -42.9 NC_005902.1 + 181002 0.68 0.999997
Target:  5'- -----cGCUUUAGGAgUUAAAGGGc- -3'
miRNA:   3'- uauauuCGGAAUCCUaAAUUUCCCau -5'
28266 5' -42.9 NC_005902.1 + 170680 0.68 0.999999
Target:  5'- uAUGUAAGCUUUAGGGUUUAAc----- -3'
miRNA:   3'- -UAUAUUCGGAAUCCUAAAUUucccau -5'
28266 5' -42.9 NC_005902.1 + 5290 0.69 0.999981
Target:  5'- -gAUAAcaCCUUAGGAaUUAAGGGGUu -3'
miRNA:   3'- uaUAUUc-GGAAUCCUaAAUUUCCCAu -5'
28266 5' -42.9 NC_005902.1 + 69283 0.69 0.99999
Target:  5'- -aAUGAuGUUUUAGGAgUUAAAGGGUu -3'
miRNA:   3'- uaUAUU-CGGAAUCCUaAAUUUCCCAu -5'
28266 5' -42.9 NC_005902.1 + 173216 0.69 0.999993
Target:  5'- uAUAUAuaaCUUAGGAgUUAAAGGGUu -3'
miRNA:   3'- -UAUAUucgGAAUCCUaAAUUUCCCAu -5'
28266 5' -42.9 NC_005902.1 + 12863 0.69 0.999993
Target:  5'- uGUAUAuaaCUUAGGAgUUAAGGGGUu -3'
miRNA:   3'- -UAUAUucgGAAUCCUaAAUUUCCCAu -5'
28266 5' -42.9 NC_005902.1 + 36351 0.69 0.999993
Target:  5'- -gAUAAccCCUUAGGAgUUAAGGGGUu -3'
miRNA:   3'- uaUAUUc-GGAAUCCUaAAUUUCCCAu -5'
28266 5' -42.9 NC_005902.1 + 48208 0.69 0.999981
Target:  5'- -gAUGAcGCCUUAGGAgcUAAAGGa-- -3'
miRNA:   3'- uaUAUU-CGGAAUCCUaaAUUUCCcau -5'
28266 5' -42.9 NC_005902.1 + 88603 0.7 0.99995
Target:  5'- -aGUAAGUauagCUUAGGugUUAAAGGGUAa -3'
miRNA:   3'- uaUAUUCG----GAAUCCuaAAUUUCCCAU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.