miRNA display CGI


Results 21 - 40 of 126 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28266 5' -42.9 NC_005902.1 + 17682 0.9 0.484506
Target:  5'- uAUAUAAGCCUUAGGGUUUAAAGGa-- -3'
miRNA:   3'- -UAUAUUCGGAAUCCUAAAUUUCCcau -5'
28266 5' -42.9 NC_005902.1 + 69266 0.9 0.516825
Target:  5'- uAUAUAAGCCUUAGaAUUUAAAGGGUGa -3'
miRNA:   3'- -UAUAUUCGGAAUCcUAAAUUUCCCAU- -5'
28266 5' -42.9 NC_005902.1 + 158177 0.88 0.606497
Target:  5'- aGUAUAAGCCUUAaGAUUUAAAGGGUu -3'
miRNA:   3'- -UAUAUUCGGAAUcCUAAAUUUCCCAu -5'
28266 5' -42.9 NC_005902.1 + 95341 0.88 0.617913
Target:  5'- uGUAUAAGCCUUAGGAUUUAAAuGGUu -3'
miRNA:   3'- -UAUAUUCGGAAUCCUAAAUUUcCCAu -5'
28266 5' -42.9 NC_005902.1 + 149727 0.86 0.674969
Target:  5'- uGUAUAAGCCUUAGGAUUUAAAGaGUu -3'
miRNA:   3'- -UAUAUUCGGAAUCCUAAAUUUCcCAu -5'
28266 5' -42.9 NC_005902.1 + 34674 0.86 0.674969
Target:  5'- aGUAUAAGCUUUAGGAUUUAAAGGa-- -3'
miRNA:   3'- -UAUAUUCGGAAUCCUAAAUUUCCcau -5'
28266 5' -42.9 NC_005902.1 + 133600 0.86 0.686297
Target:  5'- uAUAUAAGUCcUAGGAUUUAAAGGGUu -3'
miRNA:   3'- -UAUAUUCGGaAUCCUAAAUUUCCCAu -5'
28266 5' -42.9 NC_005902.1 + 82155 0.86 0.708771
Target:  5'- gGUAUAAaCUUUAGGAUUUAAAGGGUAa -3'
miRNA:   3'- -UAUAUUcGGAAUCCUAAAUUUCCCAU- -5'
28266 5' -42.9 NC_005902.1 + 110106 0.86 0.719893
Target:  5'- uGUAUAAGCUUUAGGAUUUAAAaGGUAa -3'
miRNA:   3'- -UAUAUUCGGAAUCCUAAAUUUcCCAU- -5'
28266 5' -42.9 NC_005902.1 + 12217 0.85 0.763314
Target:  5'- aAUAUGAGCUUUAGaAUUUAAAGGGUAa -3'
miRNA:   3'- -UAUAUUCGGAAUCcUAAAUUUCCCAU- -5'
28266 5' -42.9 NC_005902.1 + 151172 0.84 0.784205
Target:  5'- ---aAAGCCUUAGGAaUUAAAGGGUu -3'
miRNA:   3'- uauaUUCGGAAUCCUaAAUUUCCCAu -5'
28266 5' -42.9 NC_005902.1 + 117045 0.83 0.823844
Target:  5'- gGUAUAAGCCUUAGGAUUUAAAaaGUAa -3'
miRNA:   3'- -UAUAUUCGGAAUCCUAAAUUUccCAU- -5'
28266 5' -42.9 NC_005902.1 + 161885 0.82 0.868437
Target:  5'- aGUAUGAGCCUU-GGAUUUAAuGGGUu -3'
miRNA:   3'- -UAUAUUCGGAAuCCUAAAUUuCCCAu -5'
28266 5' -42.9 NC_005902.1 + 163489 0.82 0.876596
Target:  5'- aGUAUA-GCCUUAGGAUUUAAAGGa-- -3'
miRNA:   3'- -UAUAUuCGGAAUCCUAAAUUUCCcau -5'
28266 5' -42.9 NC_005902.1 + 118851 0.82 0.884482
Target:  5'- --uUGAuGCCUUAGGAgUUAAAGGGUAc -3'
miRNA:   3'- uauAUU-CGGAAUCCUaAAUUUCCCAU- -5'
28266 5' -42.9 NC_005902.1 + 131050 0.82 0.884482
Target:  5'- -aAUGAuGCCUUAGGggUUAAAGGGUu -3'
miRNA:   3'- uaUAUU-CGGAAUCCuaAAUUUCCCAu -5'
28266 5' -42.9 NC_005902.1 + 75878 0.81 0.89209
Target:  5'- -----uGCCUUAGGAaUUAAAGGGUAu -3'
miRNA:   3'- uauauuCGGAAUCCUaAAUUUCCCAU- -5'
28266 5' -42.9 NC_005902.1 + 175738 0.81 0.89209
Target:  5'- -aAUGAGCUUUAGGAUUUAAAaGGUAg -3'
miRNA:   3'- uaUAUUCGGAAUCCUAAAUUUcCCAU- -5'
28266 5' -42.9 NC_005902.1 + 136059 0.81 0.89209
Target:  5'- -gAUGAuGCCUUAGGAgUUAAAGGGUu -3'
miRNA:   3'- uaUAUU-CGGAAUCCUaAAUUUCCCAu -5'
28266 5' -42.9 NC_005902.1 + 90169 0.81 0.89209
Target:  5'- -gAUAAuGCCUUAGGAgUUAGAGGGUu -3'
miRNA:   3'- uaUAUU-CGGAAUCCUaAAUUUCCCAu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.