miRNA display CGI


Results 21 - 40 of 126 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28266 5' -42.9 NC_005902.1 + 137968 0.81 0.899413
Target:  5'- -aAUGAuGCCUUAGGAaUUAAAGGGUu -3'
miRNA:   3'- uaUAUU-CGGAAUCCUaAAUUUCCCAu -5'
28266 5' -42.9 NC_005902.1 + 163489 0.82 0.876596
Target:  5'- aGUAUA-GCCUUAGGAUUUAAAGGa-- -3'
miRNA:   3'- -UAUAUuCGGAAUCCUAAAUUUCCcau -5'
28266 5' -42.9 NC_005902.1 + 33126 0.91 0.442993
Target:  5'- aGUAUAAGCCUUAGGAUUUAAAaGGUGa -3'
miRNA:   3'- -UAUAUUCGGAAUCCUAAAUUUcCCAU- -5'
28266 5' -42.9 NC_005902.1 + 50392 1.02 0.127004
Target:  5'- cAUAUAAGCCUUAGGAUUUAAAGGGUu -3'
miRNA:   3'- -UAUAUUCGGAAUCCUAAAUUUCCCAu -5'
28266 5' -42.9 NC_005902.1 + 27846 0.73 0.998756
Target:  5'- uAUAUGAGUgaacacagcaaacaUUAGGAUUUAAAGGGUu -3'
miRNA:   3'- -UAUAUUCGg-------------AAUCCUAAAUUUCCCAu -5'
28266 5' -42.9 NC_005902.1 + 69159 0.77 0.979663
Target:  5'- uUGUAuAGUCUUAGGAaUUAAAGGGUu -3'
miRNA:   3'- uAUAU-UCGGAAUCCUaAAUUUCCCAu -5'
28266 5' -42.9 NC_005902.1 + 82155 0.86 0.708771
Target:  5'- gGUAUAAaCUUUAGGAUUUAAAGGGUAa -3'
miRNA:   3'- -UAUAUUcGGAAUCCUAAAUUUCCCAU- -5'
28266 5' -42.9 NC_005902.1 + 90585 1.03 0.119829
Target:  5'- uGUAUAAGCCUUAGGAUUUAAAGGGUu -3'
miRNA:   3'- -UAUAUUCGGAAUCCUAAAUUUCCCAu -5'
28266 5' -42.9 NC_005902.1 + 177411 0.78 0.964376
Target:  5'- aGUAUAAGCCaUAaGAUUUAAAGGGUu -3'
miRNA:   3'- -UAUAUUCGGaAUcCUAAAUUUCCCAu -5'
28266 5' -42.9 NC_005902.1 + 184559 1.06 0.081689
Target:  5'- cAUAUAAGCCUUAGGAUUUAAAGGGUAc -3'
miRNA:   3'- -UAUAUUCGGAAUCCUAAAUUUCCCAU- -5'
28266 5' -42.9 NC_005902.1 + 161885 0.82 0.868437
Target:  5'- aGUAUGAGCCUU-GGAUUUAAuGGGUu -3'
miRNA:   3'- -UAUAUUCGGAAuCCUAAAUUuCCCAu -5'
28266 5' -42.9 NC_005902.1 + 149293 0.81 0.899413
Target:  5'- -gAUGAuGCCUUAGGAUUUAAaAGGGUu -3'
miRNA:   3'- uaUAUU-CGGAAUCCUAAAUU-UCCCAu -5'
28266 5' -42.9 NC_005902.1 + 95341 0.88 0.617913
Target:  5'- uGUAUAAGCCUUAGGAUUUAAAuGGUu -3'
miRNA:   3'- -UAUAUUCGGAAUCCUAAAUUUcCCAu -5'
28266 5' -42.9 NC_005902.1 + 63187 0.91 0.473948
Target:  5'- aAUAUAAGCCUUAGGAUUUAAAaGGUAc -3'
miRNA:   3'- -UAUAUUCGGAAUCCUAAAUUUcCCAU- -5'
28266 5' -42.9 NC_005902.1 + 43834 0.93 0.384695
Target:  5'- ---cAAGCCUUAGGAUUUAAAGGGUu -3'
miRNA:   3'- uauaUUCGGAAUCCUAAAUUUCCCAu -5'
28266 5' -42.9 NC_005902.1 + 168402 1.02 0.138513
Target:  5'- aGUAUAAGCCUUAGGGUUUAAAGGGUu -3'
miRNA:   3'- -UAUAUUCGGAAUCCUAAAUUUCCCAu -5'
28266 5' -42.9 NC_005902.1 + 99702 0.71 0.99984
Target:  5'- -gAUGAcGCCUUAGGAaUUAAAGGa-- -3'
miRNA:   3'- uaUAUU-CGGAAUCCUaAAUUUCCcau -5'
28266 5' -42.9 NC_005902.1 + 148162 0.73 0.999115
Target:  5'- cUGUAAGUgcagcgaaugC-UAGGAUUUAAAGGGUAa -3'
miRNA:   3'- uAUAUUCG----------GaAUCCUAAAUUUCCCAU- -5'
28266 5' -42.9 NC_005902.1 + 136161 0.75 0.995083
Target:  5'- -gAUAAuGCUUUAGGAaUUAAAGGGUu -3'
miRNA:   3'- uaUAUU-CGGAAUCCUaAAUUUCCCAu -5'
28266 5' -42.9 NC_005902.1 + 143513 0.77 0.979663
Target:  5'- aGUGU-AGCaaacgUUAGGAUUUAAAGGGUAa -3'
miRNA:   3'- -UAUAuUCGg----AAUCCUAAAUUUCCCAU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.