Results 21 - 40 of 126 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28266 | 5' | -42.9 | NC_005902.1 | + | 49991 | 0.71 | 0.999908 |
Target: 5'- -aGUGAGUauauagCUUAGGAgUUAAAGGGUu -3' miRNA: 3'- uaUAUUCG------GAAUCCUaAAUUUCCCAu -5' |
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28266 | 5' | -42.9 | NC_005902.1 | + | 10103 | 0.7 | 0.999932 |
Target: 5'- -gAUGAuaCCUUAGGAgUUAAAGGGUu -3' miRNA: 3'- uaUAUUc-GGAAUCCUaAAUUUCCCAu -5' |
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28266 | 5' | -42.9 | NC_005902.1 | + | 42274 | 0.68 | 0.999997 |
Target: 5'- uGUAUAAGCCUUAGGAcUUAaccccuuaacucAAGGc-- -3' miRNA: 3'- -UAUAUUCGGAAUCCUaAAU------------UUCCcau -5' |
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28266 | 5' | -42.9 | NC_005902.1 | + | 55231 | 0.68 | 0.999997 |
Target: 5'- -gAUGAcGCCUUAGaagUUAAAGGGUu -3' miRNA: 3'- uaUAUU-CGGAAUCcuaAAUUUCCCAu -5' |
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28266 | 5' | -42.9 | NC_005902.1 | + | 170245 | 0.67 | 0.999999 |
Target: 5'- -----uGCCUUAGGAgUUAAAGGa-- -3' miRNA: 3'- uauauuCGGAAUCCUaAAUUUCCcau -5' |
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28266 | 5' | -42.9 | NC_005902.1 | + | 24198 | 0.66 | 1 |
Target: 5'- uGUAUGAGCCUUAaGAUUUAAuGaGUAa -3' miRNA: 3'- -UAUAUUCGGAAUcCUAAAUUuCcCAU- -5' |
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28266 | 5' | -42.9 | NC_005902.1 | + | 57268 | 0.66 | 1 |
Target: 5'- aGUAUAuAG-CUUAGGugUUAAAGGGUAu -3' miRNA: 3'- -UAUAU-UCgGAAUCCuaAAUUUCCCAU- -5' |
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28266 | 5' | -42.9 | NC_005902.1 | + | 137596 | 0.66 | 1 |
Target: 5'- aGUAUAAGCCUUAGGGUg--------- -3' miRNA: 3'- -UAUAUUCGGAAUCCUAaauuucccau -5' |
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28266 | 5' | -42.9 | NC_005902.1 | + | 95553 | 0.66 | 1 |
Target: 5'- -gAUGAuGCCUUAaGAgUUAAAGGGUu -3' miRNA: 3'- uaUAUU-CGGAAUcCUaAAUUUCCCAu -5' |
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28266 | 5' | -42.9 | NC_005902.1 | + | 146697 | 0.66 | 1 |
Target: 5'- -aAUGAGCacccagauaUUAGGAUUUAAAGaGUAa -3' miRNA: 3'- uaUAUUCGg--------AAUCCUAAAUUUCcCAU- -5' |
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28266 | 5' | -42.9 | NC_005902.1 | + | 104046 | 0.68 | 0.999997 |
Target: 5'- -aAUAAcaCCUUAGGAUUUAAAGGa-- -3' miRNA: 3'- uaUAUUc-GGAAUCCUAAAUUUCCcau -5' |
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28266 | 5' | -42.9 | NC_005902.1 | + | 113117 | 0.68 | 0.999995 |
Target: 5'- aGUAUAAGCCUUAaGGUUUAAAGa--- -3' miRNA: 3'- -UAUAUUCGGAAUcCUAAAUUUCccau -5' |
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28266 | 5' | -42.9 | NC_005902.1 | + | 160978 | 0.7 | 0.999932 |
Target: 5'- -----cGCUUUAGGAgUUAAAGGGg- -3' miRNA: 3'- uauauuCGGAAUCCUaAAUUUCCCau -5' |
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28266 | 5' | -42.9 | NC_005902.1 | + | 145065 | 0.7 | 0.99995 |
Target: 5'- uAUGUGAGUguauauagCUUAGGuaUUAAAGGGUGa -3' miRNA: 3'- -UAUAUUCG--------GAAUCCuaAAUUUCCCAU- -5' |
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28266 | 5' | -42.9 | NC_005902.1 | + | 151410 | 0.7 | 0.99995 |
Target: 5'- uAUAUAAaCCUUGGaAUUUAAAGGGUu -3' miRNA: 3'- -UAUAUUcGGAAUCcUAAAUUUCCCAu -5' |
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28266 | 5' | -42.9 | NC_005902.1 | + | 88603 | 0.7 | 0.99995 |
Target: 5'- -aGUAAGUauagCUUAGGugUUAAAGGGUAa -3' miRNA: 3'- uaUAUUCG----GAAUCCuaAAUUUCCCAU- -5' |
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28266 | 5' | -42.9 | NC_005902.1 | + | 139054 | 0.7 | 0.999973 |
Target: 5'- uGUAUAAGCCUUAaGAUUUAAAGa--- -3' miRNA: 3'- -UAUAUUCGGAAUcCUAAAUUUCccau -5' |
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28266 | 5' | -42.9 | NC_005902.1 | + | 5290 | 0.69 | 0.999981 |
Target: 5'- -gAUAAcaCCUUAGGAaUUAAGGGGUu -3' miRNA: 3'- uaUAUUc-GGAAUCCUaAAUUUCCCAu -5' |
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28266 | 5' | -42.9 | NC_005902.1 | + | 69283 | 0.69 | 0.99999 |
Target: 5'- -aAUGAuGUUUUAGGAgUUAAAGGGUu -3' miRNA: 3'- uaUAUU-CGGAAUCCUaAAUUUCCCAu -5' |
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28266 | 5' | -42.9 | NC_005902.1 | + | 12863 | 0.69 | 0.999993 |
Target: 5'- uGUAUAuaaCUUAGGAgUUAAGGGGUu -3' miRNA: 3'- -UAUAUucgGAAUCCUaAAUUUCCCAu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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