miRNA display CGI


Results 1 - 20 of 126 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28266 5' -42.9 NC_005902.1 + 49991 0.71 0.999908
Target:  5'- -aGUGAGUauauagCUUAGGAgUUAAAGGGUu -3'
miRNA:   3'- uaUAUUCG------GAAUCCUaAAUUUCCCAu -5'
28266 5' -42.9 NC_005902.1 + 69283 0.69 0.99999
Target:  5'- -aAUGAuGUUUUAGGAgUUAAAGGGUu -3'
miRNA:   3'- uaUAUU-CGGAAUCCUaAAUUUCCCAu -5'
28266 5' -42.9 NC_005902.1 + 5290 0.69 0.999981
Target:  5'- -gAUAAcaCCUUAGGAaUUAAGGGGUu -3'
miRNA:   3'- uaUAUUc-GGAAUCCUaAAUUUCCCAu -5'
28266 5' -42.9 NC_005902.1 + 139054 0.7 0.999973
Target:  5'- uGUAUAAGCCUUAaGAUUUAAAGa--- -3'
miRNA:   3'- -UAUAUUCGGAAUcCUAAAUUUCccau -5'
28266 5' -42.9 NC_005902.1 + 88603 0.7 0.99995
Target:  5'- -aGUAAGUauagCUUAGGugUUAAAGGGUAa -3'
miRNA:   3'- uaUAUUCG----GAAUCCuaAAUUUCCCAU- -5'
28266 5' -42.9 NC_005902.1 + 151410 0.7 0.99995
Target:  5'- uAUAUAAaCCUUGGaAUUUAAAGGGUu -3'
miRNA:   3'- -UAUAUUcGGAAUCcUAAAUUUCCCAu -5'
28266 5' -42.9 NC_005902.1 + 145065 0.7 0.99995
Target:  5'- uAUGUGAGUguauauagCUUAGGuaUUAAAGGGUGa -3'
miRNA:   3'- -UAUAUUCG--------GAAUCCuaAAUUUCCCAU- -5'
28266 5' -42.9 NC_005902.1 + 160978 0.7 0.999932
Target:  5'- -----cGCUUUAGGAgUUAAAGGGg- -3'
miRNA:   3'- uauauuCGGAAUCCUaAAUUUCCCau -5'
28266 5' -42.9 NC_005902.1 + 10103 0.7 0.999932
Target:  5'- -gAUGAuaCCUUAGGAgUUAAAGGGUu -3'
miRNA:   3'- uaUAUUc-GGAAUCCUaAAUUUCCCAu -5'
28266 5' -42.9 NC_005902.1 + 12863 0.69 0.999993
Target:  5'- uGUAUAuaaCUUAGGAgUUAAGGGGUu -3'
miRNA:   3'- -UAUAUucgGAAUCCUaAAUUUCCCAu -5'
28266 5' -42.9 NC_005902.1 + 113117 0.68 0.999995
Target:  5'- aGUAUAAGCCUUAaGGUUUAAAGa--- -3'
miRNA:   3'- -UAUAUUCGGAAUcCUAAAUUUCccau -5'
28266 5' -42.9 NC_005902.1 + 104046 0.68 0.999997
Target:  5'- -aAUAAcaCCUUAGGAUUUAAAGGa-- -3'
miRNA:   3'- uaUAUUc-GGAAUCCUAAAUUUCCcau -5'
28266 5' -42.9 NC_005902.1 + 146697 0.66 1
Target:  5'- -aAUGAGCacccagauaUUAGGAUUUAAAGaGUAa -3'
miRNA:   3'- uaUAUUCGg--------AAUCCUAAAUUUCcCAU- -5'
28266 5' -42.9 NC_005902.1 + 95553 0.66 1
Target:  5'- -gAUGAuGCCUUAaGAgUUAAAGGGUu -3'
miRNA:   3'- uaUAUU-CGGAAUcCUaAAUUUCCCAu -5'
28266 5' -42.9 NC_005902.1 + 137596 0.66 1
Target:  5'- aGUAUAAGCCUUAGGGUg--------- -3'
miRNA:   3'- -UAUAUUCGGAAUCCUAaauuucccau -5'
28266 5' -42.9 NC_005902.1 + 57268 0.66 1
Target:  5'- aGUAUAuAG-CUUAGGugUUAAAGGGUAu -3'
miRNA:   3'- -UAUAU-UCgGAAUCCuaAAUUUCCCAU- -5'
28266 5' -42.9 NC_005902.1 + 24198 0.66 1
Target:  5'- uGUAUGAGCCUUAaGAUUUAAuGaGUAa -3'
miRNA:   3'- -UAUAUUCGGAAUcCUAAAUUuCcCAU- -5'
28266 5' -42.9 NC_005902.1 + 170245 0.67 0.999999
Target:  5'- -----uGCCUUAGGAgUUAAAGGa-- -3'
miRNA:   3'- uauauuCGGAAUCCUaAAUUUCCcau -5'
28266 5' -42.9 NC_005902.1 + 55231 0.68 0.999997
Target:  5'- -gAUGAcGCCUUAGaagUUAAAGGGUu -3'
miRNA:   3'- uaUAUU-CGGAAUCcuaAAUUUCCCAu -5'
28266 5' -42.9 NC_005902.1 + 42274 0.68 0.999997
Target:  5'- uGUAUAAGCCUUAGGAcUUAaccccuuaacucAAGGc-- -3'
miRNA:   3'- -UAUAUUCGGAAUCCUaAAU------------UUCCcau -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.