miRNA display CGI


Results 41 - 60 of 126 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28266 5' -42.9 NC_005902.1 + 136088 0.72 0.999291
Target:  5'- uGUAUAuAG-CUUAGGAgUUAAAGGGUAu -3'
miRNA:   3'- -UAUAU-UCgGAAUCCUaAAUUUCCCAU- -5'
28266 5' -42.9 NC_005902.1 + 122874 0.81 0.89209
Target:  5'- -gAUGAuGCCUUAGGAaUUAAAGGGUu -3'
miRNA:   3'- uaUAUU-CGGAAUCCUaAAUUUCCCAu -5'
28266 5' -42.9 NC_005902.1 + 65669 1.01 0.142558
Target:  5'- aGUAUAAGCCUUAGGAUUUAAAGGGg- -3'
miRNA:   3'- -UAUAUUCGGAAUCCUAAAUUUCCCau -5'
28266 5' -42.9 NC_005902.1 + 148162 0.73 0.999115
Target:  5'- cUGUAAGUgcagcgaaugC-UAGGAUUUAAAGGGUAa -3'
miRNA:   3'- uAUAUUCG----------GaAUCCUAAAUUUCCCAU- -5'
28266 5' -42.9 NC_005902.1 + 168402 1.02 0.138513
Target:  5'- aGUAUAAGCCUUAGGGUUUAAAGGGUu -3'
miRNA:   3'- -UAUAUUCGGAAUCCUAAAUUUCCCAu -5'
28266 5' -42.9 NC_005902.1 + 81139 0.67 1
Target:  5'- aAUAcAAcCCUUAGGAUUUAAAGGa-- -3'
miRNA:   3'- -UAUaUUcGGAAUCCUAAAUUUCCcau -5'
28266 5' -42.9 NC_005902.1 + 43834 0.93 0.384695
Target:  5'- ---cAAGCCUUAGGAUUUAAAGGGUu -3'
miRNA:   3'- uauaUUCGGAAUCCUAAAUUUCCCAu -5'
28266 5' -42.9 NC_005902.1 + 167292 0.67 0.999999
Target:  5'- uGUAUAuaaCUUAGGugUUAAAGGGUAa -3'
miRNA:   3'- -UAUAUucgGAAUCCuaAAUUUCCCAU- -5'
28266 5' -42.9 NC_005902.1 + 80769 0.67 0.999999
Target:  5'- -aGUGAGUggguauauagCUUAGGugUUAAAGGGUAa -3'
miRNA:   3'- uaUAUUCG----------GAAUCCuaAAUUUCCCAU- -5'
28266 5' -42.9 NC_005902.1 + 14903 0.68 0.999998
Target:  5'- uAUAUAAGCCUUAaaAUUUAAAGGa-- -3'
miRNA:   3'- -UAUAUUCGGAAUccUAAAUUUCCcau -5'
28266 5' -42.9 NC_005902.1 + 36351 0.69 0.999993
Target:  5'- -gAUAAccCCUUAGGAgUUAAGGGGUu -3'
miRNA:   3'- uaUAUUc-GGAAUCCUaAAUUUCCCAu -5'
28266 5' -42.9 NC_005902.1 + 127510 0.7 0.999963
Target:  5'- aAUGUGAGCaaucAGGAagucUUAAAGGGUAa -3'
miRNA:   3'- -UAUAUUCGgaa-UCCUa---AAUUUCCCAU- -5'
28266 5' -42.9 NC_005902.1 + 99702 0.71 0.99984
Target:  5'- -gAUGAcGCCUUAGGAaUUAAAGGa-- -3'
miRNA:   3'- uaUAUU-CGGAAUCCUaAAUUUCCcau -5'
28266 5' -42.9 NC_005902.1 + 67028 0.74 0.997988
Target:  5'- -aAUGAGUauauagCUUAGGAgUUAAAGGGUAu -3'
miRNA:   3'- uaUAUUCG------GAAUCCUaAAUUUCCCAU- -5'
28266 5' -42.9 NC_005902.1 + 130915 0.77 0.982016
Target:  5'- uUAUA-G-CUUAGGAUUUAAAGGGUAc -3'
miRNA:   3'- uAUAUuCgGAAUCCUAAAUUUCCCAU- -5'
28266 5' -42.9 NC_005902.1 + 12702 0.78 0.964376
Target:  5'- aGUAUAAGCCUUAaGAUUUAAcGGGUu -3'
miRNA:   3'- -UAUAUUCGGAAUcCUAAAUUuCCCAu -5'
28266 5' -42.9 NC_005902.1 + 137968 0.81 0.899413
Target:  5'- -aAUGAuGCCUUAGGAaUUAAAGGGUu -3'
miRNA:   3'- uaUAUU-CGGAAUCCUaAAUUUCCCAu -5'
28266 5' -42.9 NC_005902.1 + 82155 0.86 0.708771
Target:  5'- gGUAUAAaCUUUAGGAUUUAAAGGGUAa -3'
miRNA:   3'- -UAUAUUcGGAAUCCUAAAUUUCCCAU- -5'
28266 5' -42.9 NC_005902.1 + 95341 0.88 0.617913
Target:  5'- uGUAUAAGCCUUAGGAUUUAAAuGGUu -3'
miRNA:   3'- -UAUAUUCGGAAUCCUAAAUUUcCCAu -5'
28266 5' -42.9 NC_005902.1 + 33126 0.91 0.442993
Target:  5'- aGUAUAAGCCUUAGGAUUUAAAaGGUGa -3'
miRNA:   3'- -UAUAUUCGGAAUCCUAAAUUUcCCAU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.