miRNA display CGI


Results 21 - 40 of 126 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28266 5' -42.9 NC_005902.1 + 154625 0.67 1
Target:  5'- uGUAUAuAG-CUUAGGuaUUAAAGGGUAa -3'
miRNA:   3'- -UAUAU-UCgGAAUCCuaAAUUUCCCAU- -5'
28266 5' -42.9 NC_005902.1 + 152959 0.78 0.967244
Target:  5'- uAUAUAAGCCUUAGGAUUUAAAagauuaacucaaGGUAu -3'
miRNA:   3'- -UAUAUUCGGAAUCCUAAAUUUc-----------CCAU- -5'
28266 5' -42.9 NC_005902.1 + 151410 0.7 0.99995
Target:  5'- uAUAUAAaCCUUGGaAUUUAAAGGGUu -3'
miRNA:   3'- -UAUAUUcGGAAUCcUAAAUUUCCCAu -5'
28266 5' -42.9 NC_005902.1 + 151172 0.84 0.784205
Target:  5'- ---aAAGCCUUAGGAaUUAAAGGGUu -3'
miRNA:   3'- uauaUUCGGAAUCCUaAAUUUCCCAu -5'
28266 5' -42.9 NC_005902.1 + 149802 0.72 0.999729
Target:  5'- aGUAUAAGCCUUAaGAUUUAAAGaGUu -3'
miRNA:   3'- -UAUAUUCGGAAUcCUAAAUUUCcCAu -5'
28266 5' -42.9 NC_005902.1 + 149727 0.86 0.674969
Target:  5'- uGUAUAAGCCUUAGGAUUUAAAGaGUu -3'
miRNA:   3'- -UAUAUUCGGAAUCCUAAAUUUCcCAu -5'
28266 5' -42.9 NC_005902.1 + 149293 0.81 0.899413
Target:  5'- -gAUGAuGCCUUAGGAUUUAAaAGGGUu -3'
miRNA:   3'- uaUAUU-CGGAAUCCUAAAUU-UCCCAu -5'
28266 5' -42.9 NC_005902.1 + 148162 0.73 0.999115
Target:  5'- cUGUAAGUgcagcgaaugC-UAGGAUUUAAAGGGUAa -3'
miRNA:   3'- uAUAUUCG----------GaAUCCUAAAUUUCCCAU- -5'
28266 5' -42.9 NC_005902.1 + 146697 0.66 1
Target:  5'- -aAUGAGCacccagauaUUAGGAUUUAAAGaGUAa -3'
miRNA:   3'- uaUAUUCGg--------AAUCCUAAAUUUCcCAU- -5'
28266 5' -42.9 NC_005902.1 + 145065 0.7 0.99995
Target:  5'- uAUGUGAGUguauauagCUUAGGuaUUAAAGGGUGa -3'
miRNA:   3'- -UAUAUUCG--------GAAUCCuaAAUUUCCCAU- -5'
28266 5' -42.9 NC_005902.1 + 143513 0.77 0.979663
Target:  5'- aGUGU-AGCaaacgUUAGGAUUUAAAGGGUAa -3'
miRNA:   3'- -UAUAuUCGg----AAUCCUAAAUUUCCCAU- -5'
28266 5' -42.9 NC_005902.1 + 139785 1.06 0.076961
Target:  5'- uAUAUAAGCCUUAGGAUUUAAAGGGUAa -3'
miRNA:   3'- -UAUAUUCGGAAUCCUAAAUUUCCCAU- -5'
28266 5' -42.9 NC_005902.1 + 139054 0.7 0.999973
Target:  5'- uGUAUAAGCCUUAaGAUUUAAAGa--- -3'
miRNA:   3'- -UAUAUUCGGAAUcCUAAAUUUCccau -5'
28266 5' -42.9 NC_005902.1 + 137968 0.81 0.899413
Target:  5'- -aAUGAuGCCUUAGGAaUUAAAGGGUu -3'
miRNA:   3'- uaUAUU-CGGAAUCCUaAAUUUCCCAu -5'
28266 5' -42.9 NC_005902.1 + 137596 0.66 1
Target:  5'- aGUAUAAGCCUUAGGGUg--------- -3'
miRNA:   3'- -UAUAUUCGGAAUCCUAaauuucccau -5'
28266 5' -42.9 NC_005902.1 + 136161 0.75 0.995083
Target:  5'- -gAUAAuGCUUUAGGAaUUAAAGGGUu -3'
miRNA:   3'- uaUAUU-CGGAAUCCUaAAUUUCCCAu -5'
28266 5' -42.9 NC_005902.1 + 136088 0.72 0.999291
Target:  5'- uGUAUAuAG-CUUAGGAgUUAAAGGGUAu -3'
miRNA:   3'- -UAUAU-UCgGAAUCCUaAAUUUCCCAU- -5'
28266 5' -42.9 NC_005902.1 + 136059 0.81 0.89209
Target:  5'- -gAUGAuGCCUUAGGAgUUAAAGGGUu -3'
miRNA:   3'- uaUAUU-CGGAAUCCUaAAUUUCCCAu -5'
28266 5' -42.9 NC_005902.1 + 135669 0.77 0.982016
Target:  5'- uAUAUGAGUgaaugUUAGGAUUUAAAGGGUu -3'
miRNA:   3'- -UAUAUUCGg----AAUCCUAAAUUUCCCAu -5'
28266 5' -42.9 NC_005902.1 + 133600 0.86 0.686297
Target:  5'- uAUAUAAGUCcUAGGAUUUAAAGGGUu -3'
miRNA:   3'- -UAUAUUCGGaAUCCUAAAUUUCCCAu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.