miRNA display CGI


Results 1 - 20 of 126 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28266 5' -42.9 NC_005902.1 + 184559 1.06 0.081689
Target:  5'- cAUAUAAGCCUUAGGAUUUAAAGGGUAc -3'
miRNA:   3'- -UAUAUUCGGAAUCCUAAAUUUCCCAU- -5'
28266 5' -42.9 NC_005902.1 + 182606 0.73 0.998903
Target:  5'- aAUAUAAGgCUUAGuuUUUAAAGGGUu -3'
miRNA:   3'- -UAUAUUCgGAAUCcuAAAUUUCCCAu -5'
28266 5' -42.9 NC_005902.1 + 181002 0.68 0.999997
Target:  5'- -----cGCUUUAGGAgUUAAAGGGc- -3'
miRNA:   3'- uauauuCGGAAUCCUaAAUUUCCCau -5'
28266 5' -42.9 NC_005902.1 + 177411 0.78 0.964376
Target:  5'- aGUAUAAGCCaUAaGAUUUAAAGGGUu -3'
miRNA:   3'- -UAUAUUCGGaAUcCUAAAUUUCCCAu -5'
28266 5' -42.9 NC_005902.1 + 175738 0.81 0.89209
Target:  5'- -aAUGAGCUUUAGGAUUUAAAaGGUAg -3'
miRNA:   3'- uaUAUUCGGAAUCCUAAAUUUcCCAU- -5'
28266 5' -42.9 NC_005902.1 + 173379 0.74 0.996503
Target:  5'- uUGUAuGUCUUAaGAUUUAAAGGGUAa -3'
miRNA:   3'- uAUAUuCGGAAUcCUAAAUUUCCCAU- -5'
28266 5' -42.9 NC_005902.1 + 173216 0.69 0.999993
Target:  5'- uAUAUAuaaCUUAGGAgUUAAAGGGUu -3'
miRNA:   3'- -UAUAUucgGAAUCCUaAAUUUCCCAu -5'
28266 5' -42.9 NC_005902.1 + 170680 0.68 0.999999
Target:  5'- uAUGUAAGCUUUAGGGUUUAAc----- -3'
miRNA:   3'- -UAUAUUCGGAAUCCUAAAUUucccau -5'
28266 5' -42.9 NC_005902.1 + 170245 0.67 0.999999
Target:  5'- -----uGCCUUAGGAgUUAAAGGa-- -3'
miRNA:   3'- uauauuCGGAAUCCUaAAUUUCCcau -5'
28266 5' -42.9 NC_005902.1 + 170174 0.75 0.993226
Target:  5'- cAUAUAAaCCUUAGaAUUUAAAGGGUAa -3'
miRNA:   3'- -UAUAUUcGGAAUCcUAAAUUUCCCAU- -5'
28266 5' -42.9 NC_005902.1 + 169238 0.81 0.899413
Target:  5'- -aAUGAuGCCUUAGGAgUUAAAGGGUu -3'
miRNA:   3'- uaUAUU-CGGAAUCCUaAAUUUCCCAu -5'
28266 5' -42.9 NC_005902.1 + 168402 1.02 0.138513
Target:  5'- aGUAUAAGCCUUAGGGUUUAAAGGGUu -3'
miRNA:   3'- -UAUAUUCGGAAUCCUAAAUUUCCCAu -5'
28266 5' -42.9 NC_005902.1 + 167346 0.79 0.952065
Target:  5'- -aAUGAuGCUUUAGGAaUUAAAGGGUAa -3'
miRNA:   3'- uaUAUU-CGGAAUCCUaAAUUUCCCAU- -5'
28266 5' -42.9 NC_005902.1 + 167292 0.67 0.999999
Target:  5'- uGUAUAuaaCUUAGGugUUAAAGGGUAa -3'
miRNA:   3'- -UAUAUucgGAAUCCuaAAUUUCCCAU- -5'
28266 5' -42.9 NC_005902.1 + 163489 0.82 0.876596
Target:  5'- aGUAUA-GCCUUAGGAUUUAAAGGa-- -3'
miRNA:   3'- -UAUAUuCGGAAUCCUAAAUUUCCcau -5'
28266 5' -42.9 NC_005902.1 + 161885 0.82 0.868437
Target:  5'- aGUAUGAGCCUU-GGAUUUAAuGGGUu -3'
miRNA:   3'- -UAUAUUCGGAAuCCUAAAUUuCCCAu -5'
28266 5' -42.9 NC_005902.1 + 160978 0.7 0.999932
Target:  5'- -----cGCUUUAGGAgUUAAAGGGg- -3'
miRNA:   3'- uauauuCGGAAUCCUaAAUUUCCCau -5'
28266 5' -42.9 NC_005902.1 + 159836 0.8 0.919633
Target:  5'- -aAUGAuGCCUUAGGAgUUAAGGGGUu -3'
miRNA:   3'- uaUAUU-CGGAAUCCUaAAUUUCCCAu -5'
28266 5' -42.9 NC_005902.1 + 158177 0.88 0.606497
Target:  5'- aGUAUAAGCCUUAaGAUUUAAAGGGUu -3'
miRNA:   3'- -UAUAUUCGGAAUcCUAAAUUUCCCAu -5'
28266 5' -42.9 NC_005902.1 + 157113 1 0.164442
Target:  5'- aGUAUAAGCUUUAGGAUUUAAAGGGUAc -3'
miRNA:   3'- -UAUAUUCGGAAUCCUAAAUUUCCCAU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.