miRNA display CGI


Results 61 - 80 of 226 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28267 3' -44.5 NC_005902.1 + 90590 0.69 0.999924
Target:  5'- aUACCUUaagagUUAagggguaaaACACCUAAGCUguauAUGAACu -3'
miRNA:   3'- -GUGGAA-----AAU---------UGUGGGUUCGA----UACUUG- -5'
28267 3' -44.5 NC_005902.1 + 8412 0.69 0.999867
Target:  5'- uCACUUUUUAACACCUAAaCUAUauACa -3'
miRNA:   3'- -GUGGAAAAUUGUGGGUUcGAUAcuUG- -5'
28267 3' -44.5 NC_005902.1 + 177588 0.69 0.999867
Target:  5'- aACCUUUUAACACCUAAaCUAUu--- -3'
miRNA:   3'- gUGGAAAAUUGUGGGUUcGAUAcuug -5'
28267 3' -44.5 NC_005902.1 + 57235 0.69 0.999867
Target:  5'- aACUcUUUAACAUCUuAGCUGUGAGu -3'
miRNA:   3'- gUGGaAAAUUGUGGGuUCGAUACUUg -5'
28267 3' -44.5 NC_005902.1 + 4194 0.7 0.999827
Target:  5'- aACCUUUUAAUAUUUAAGCUAUa--- -3'
miRNA:   3'- gUGGAAAAUUGUGGGUUCGAUAcuug -5'
28267 3' -44.5 NC_005902.1 + 100522 0.7 0.999827
Target:  5'- aACUUUUUGACACCUAAuCUAUaAACa -3'
miRNA:   3'- gUGGAAAAUUGUGGGUUcGAUAcUUG- -5'
28267 3' -44.5 NC_005902.1 + 11404 0.7 0.999827
Target:  5'- uCACUcUUUAACACUUAAGCUAUauACu -3'
miRNA:   3'- -GUGGaAAAUUGUGGGUUCGAUAcuUG- -5'
28267 3' -44.5 NC_005902.1 + 78856 0.7 0.999827
Target:  5'- aACCUUUUAACcCUUAAGCUAUauACu -3'
miRNA:   3'- gUGGAAAAUUGuGGGUUCGAUAcuUG- -5'
28267 3' -44.5 NC_005902.1 + 1144 0.7 0.999827
Target:  5'- aACCcUUUAAgACCUAAGCUGUauACa -3'
miRNA:   3'- gUGGaAAAUUgUGGGUUCGAUAcuUG- -5'
28267 3' -44.5 NC_005902.1 + 83731 0.7 0.999827
Target:  5'- aUACCUUUUAACACUUAAGUgauauACa -3'
miRNA:   3'- -GUGGAAAAUUGUGGGUUCGauacuUG- -5'
28267 3' -44.5 NC_005902.1 + 47183 0.7 0.999827
Target:  5'- aACC-UUUAACACUUAAGCUAUauACu -3'
miRNA:   3'- gUGGaAAAUUGUGGGUUCGAUAcuUG- -5'
28267 3' -44.5 NC_005902.1 + 135890 0.7 0.999827
Target:  5'- aACUcUUUAACAUUUAAGCUAUGuACa -3'
miRNA:   3'- gUGGaAAAUUGUGGGUUCGAUACuUG- -5'
28267 3' -44.5 NC_005902.1 + 140915 0.7 0.999712
Target:  5'- gGCUUaaucaUAACACCUAAGCUAUauacGAACa -3'
miRNA:   3'- gUGGAaa---AUUGUGGGUUCGAUA----CUUG- -5'
28267 3' -44.5 NC_005902.1 + 81170 0.7 0.999712
Target:  5'- aACCcUUUAAUACCUAccuaAGCUAuauaUGAGCg -3'
miRNA:   3'- gUGGaAAAUUGUGGGU----UCGAU----ACUUG- -5'
28267 3' -44.5 NC_005902.1 + 169441 0.7 0.999712
Target:  5'- aACCcUUUAACACUUAAGCUGUa--- -3'
miRNA:   3'- gUGGaAAAUUGUGGGUUCGAUAcuug -5'
28267 3' -44.5 NC_005902.1 + 90591 0.7 0.999705
Target:  5'- aGCCUUaggauuuaaagggUUAACACCUAAGCUugcUGAu- -3'
miRNA:   3'- gUGGAA-------------AAUUGUGGGUUCGAu--ACUug -5'
28267 3' -44.5 NC_005902.1 + 169510 0.7 0.999633
Target:  5'- aACUcUUUAACACCUGAGCUAUa--- -3'
miRNA:   3'- gUGGaAAAUUGUGGGUUCGAUAcuug -5'
28267 3' -44.5 NC_005902.1 + 28970 0.7 0.999633
Target:  5'- aGCUUaggugUUAACACCUAAGCUAUacACa -3'
miRNA:   3'- gUGGAa----AAUUGUGGGUUCGAUAcuUG- -5'
28267 3' -44.5 NC_005902.1 + 23286 0.7 0.999633
Target:  5'- aAUCcUUUAAUACCUAAGCUAuauaUGAAUg -3'
miRNA:   3'- gUGGaAAAUUGUGGGUUCGAU----ACUUG- -5'
28267 3' -44.5 NC_005902.1 + 109915 0.7 0.999633
Target:  5'- aACCcUUUAAgACCUAAGCUAUauGCa -3'
miRNA:   3'- gUGGaAAAUUgUGGGUUCGAUAcuUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.