miRNA display CGI


Results 41 - 60 of 226 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28267 3' -44.5 NC_005902.1 + 76084 0.68 0.999988
Target:  5'- aACCcUUUAAgACCUAAGCUAUa--- -3'
miRNA:   3'- gUGGaAAAUUgUGGGUUCGAUAcuug -5'
28267 3' -44.5 NC_005902.1 + 135987 0.68 0.999988
Target:  5'- aAUCUUUUAACACCUAAGUa------ -3'
miRNA:   3'- gUGGAAAAUUGUGGGUUCGauacuug -5'
28267 3' -44.5 NC_005902.1 + 158118 0.68 0.999984
Target:  5'- aACCcUUUAAUACUUAAGCUAUauACa -3'
miRNA:   3'- gUGGaAAAUUGUGGGUUCGAUAcuUG- -5'
28267 3' -44.5 NC_005902.1 + 162389 0.68 0.999984
Target:  5'- -uCCcUUUAACACCUAAGCUAc---- -3'
miRNA:   3'- guGGaAAAUUGUGGGUUCGAUacuug -5'
28267 3' -44.5 NC_005902.1 + 116826 0.68 0.999984
Target:  5'- aUACCcUUUAACAUCUAAGUUAUauACa -3'
miRNA:   3'- -GUGGaAAAUUGUGGGUUCGAUAcuUG- -5'
28267 3' -44.5 NC_005902.1 + 41980 0.68 0.999984
Target:  5'- aAUUgUUUAACACCUAAGCUAUauACu -3'
miRNA:   3'- gUGGaAAAUUGUGGGUUCGAUAcuUG- -5'
28267 3' -44.5 NC_005902.1 + 151174 0.68 0.999983
Target:  5'- aGCCUUaggaauuaaagggUUAACACCUAAGUUauauauagauguaGUGAAUg -3'
miRNA:   3'- gUGGAA-------------AAUUGUGGGUUCGA-------------UACUUG- -5'
28267 3' -44.5 NC_005902.1 + 145043 0.68 0.999977
Target:  5'- uUAUUcUUUAGCACCUAAGCUauauGUGAGu -3'
miRNA:   3'- -GUGGaAAAUUGUGGGUUCGA----UACUUg -5'
28267 3' -44.5 NC_005902.1 + 54332 0.68 0.999977
Target:  5'- uGCUUUaaaggaUUAACACCUAAGCUAUa--- -3'
miRNA:   3'- gUGGAA------AAUUGUGGGUUCGAUAcuug -5'
28267 3' -44.5 NC_005902.1 + 184372 0.68 0.999977
Target:  5'- aACCUUUUAACACCCGuuauaUAUaGAAa -3'
miRNA:   3'- gUGGAAAAUUGUGGGUucg--AUA-CUUg -5'
28267 3' -44.5 NC_005902.1 + 153031 0.68 0.999977
Target:  5'- aACUUUUaAACAUUUAAGCUAUGuACa -3'
miRNA:   3'- gUGGAAAaUUGUGGGUUCGAUACuUG- -5'
28267 3' -44.5 NC_005902.1 + 81050 0.68 0.999958
Target:  5'- aAUUUUUUAACAUCUAAGCUAU--ACa -3'
miRNA:   3'- gUGGAAAAUUGUGGGUUCGAUAcuUG- -5'
28267 3' -44.5 NC_005902.1 + 49950 0.68 0.999958
Target:  5'- aUACCcUUUAACuCCUAAGCUAUauACa -3'
miRNA:   3'- -GUGGaAAAUUGuGGGUUCGAUAcuUG- -5'
28267 3' -44.5 NC_005902.1 + 157072 0.68 0.999958
Target:  5'- aGCUUaggugUUAACACCUAAGCUAU--ACa -3'
miRNA:   3'- gUGGAa----AAUUGUGGGUUCGAUAcuUG- -5'
28267 3' -44.5 NC_005902.1 + 166125 0.68 0.999958
Target:  5'- aUACCcUUUAAUACUUAAGCUAUauACa -3'
miRNA:   3'- -GUGGaAAAUUGUGGGUUCGAUAcuUG- -5'
28267 3' -44.5 NC_005902.1 + 21167 0.68 0.999958
Target:  5'- -uCCcUUUAACACUUAAGCUAuauaUGAAUa -3'
miRNA:   3'- guGGaAAAUUGUGGGUUCGAU----ACUUG- -5'
28267 3' -44.5 NC_005902.1 + 180882 0.69 0.999943
Target:  5'- aACCcUUUAACAUCUAAGCaauaucacaaGUGAGCa -3'
miRNA:   3'- gUGGaAAAUUGUGGGUUCGa---------UACUUG- -5'
28267 3' -44.5 NC_005902.1 + 75900 0.69 0.999943
Target:  5'- uUAUCcUUUAAUACCUAAGCUAUauACa -3'
miRNA:   3'- -GUGGaAAAUUGUGGGUUCGAUAcuUG- -5'
28267 3' -44.5 NC_005902.1 + 54885 0.69 0.999924
Target:  5'- aACCc-UUAAUACCUAAGCUAUauacaaaaGAACa -3'
miRNA:   3'- gUGGaaAAUUGUGGGUUCGAUA--------CUUG- -5'
28267 3' -44.5 NC_005902.1 + 90590 0.69 0.999924
Target:  5'- aUACCUUaagagUUAagggguaaaACACCUAAGCUguauAUGAACu -3'
miRNA:   3'- -GUGGAA-----AAU---------UGUGGGUUCGA----UACUUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.