miRNA display CGI


Results 41 - 60 of 226 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28267 3' -44.5 NC_005902.1 + 91856 0.78 0.930357
Target:  5'- aACCcUUUAACACCUAAGCUAUauACa -3'
miRNA:   3'- gUGGaAAAUUGUGGGUUCGAUAcuUG- -5'
28267 3' -44.5 NC_005902.1 + 127775 0.78 0.935825
Target:  5'- uUACCUUUUAACACUgAAGCUAUauACu -3'
miRNA:   3'- -GUGGAAAAUUGUGGgUUCGAUAcuUG- -5'
28267 3' -44.5 NC_005902.1 + 143771 0.78 0.941011
Target:  5'- aUACCcUUUAACACCUAAGCUAUauACu -3'
miRNA:   3'- -GUGGaAAAUUGUGGGUUCGAUAcuUG- -5'
28267 3' -44.5 NC_005902.1 + 180612 0.78 0.941011
Target:  5'- uCGCUUuaauucUUUAACACCUAAGCUuauAUGAACa -3'
miRNA:   3'- -GUGGA------AAAUUGUGGGUUCGA---UACUUG- -5'
28267 3' -44.5 NC_005902.1 + 128770 0.78 0.941011
Target:  5'- aUACCcUUUAACACCUAAGCUAUauACu -3'
miRNA:   3'- -GUGGaAAAUUGUGGGUUCGAUAcuUG- -5'
28267 3' -44.5 NC_005902.1 + 172813 0.77 0.954909
Target:  5'- uUACCcUUUAACACCUAAGCUAuauaUGAGu -3'
miRNA:   3'- -GUGGaAAAUUGUGGGUUCGAU----ACUUg -5'
28267 3' -44.5 NC_005902.1 + 99555 0.77 0.954909
Target:  5'- aACCcUUUAACACCUAAGCUAUauACu -3'
miRNA:   3'- gUGGaAAAUUGUGGGUUCGAUAcuUG- -5'
28267 3' -44.5 NC_005902.1 + 140684 0.77 0.959
Target:  5'- aACuCUUUUAACAUCCAAGCUAUaAAUa -3'
miRNA:   3'- gUG-GAAAAUUGUGGGUUCGAUAcUUG- -5'
28267 3' -44.5 NC_005902.1 + 182934 0.77 0.962828
Target:  5'- ---aUUUUAACACCUAAGCUAuauaUGAACa -3'
miRNA:   3'- guggAAAAUUGUGGGUUCGAU----ACUUG- -5'
28267 3' -44.5 NC_005902.1 + 108899 0.77 0.962828
Target:  5'- aACCUUUUAACAgCUAGGCUAUauACa -3'
miRNA:   3'- gUGGAAAAUUGUgGGUUCGAUAcuUG- -5'
28267 3' -44.5 NC_005902.1 + 40965 0.77 0.962828
Target:  5'- uCACCcUUUAAUACCUAAGCUAUauACa -3'
miRNA:   3'- -GUGGaAAAUUGUGGGUUCGAUAcuUG- -5'
28267 3' -44.5 NC_005902.1 + 105262 0.77 0.962828
Target:  5'- uUACCcUUUAACACCUAAGCUAUa--- -3'
miRNA:   3'- -GUGGaAAAUUGUGGGUUCGAUAcuug -5'
28267 3' -44.5 NC_005902.1 + 97434 0.77 0.962828
Target:  5'- uUACCcUUUAACACCUAAGCUAUa--- -3'
miRNA:   3'- -GUGGaAAAUUGUGGGUUCGAUAcuug -5'
28267 3' -44.5 NC_005902.1 + 170699 0.76 0.969723
Target:  5'- aACUcUUUAACACCUAAGCUAuauaUGAAUa -3'
miRNA:   3'- gUGGaAAAUUGUGGGUUCGAU----ACUUG- -5'
28267 3' -44.5 NC_005902.1 + 13181 0.76 0.969723
Target:  5'- aACCcUUUAACACCUAAGCUAUa--- -3'
miRNA:   3'- gUGGaAAAUUGUGGGUUCGAUAcuug -5'
28267 3' -44.5 NC_005902.1 + 50209 0.76 0.969723
Target:  5'- aACCcUUUAACACCUAAGCUAUa--- -3'
miRNA:   3'- gUGGaAAAUUGUGGGUUCGAUAcuug -5'
28267 3' -44.5 NC_005902.1 + 184860 0.76 0.969723
Target:  5'- aACCcUUUAACACCUAAGCUGUa--- -3'
miRNA:   3'- gUGGaAAAUUGUGGGUUCGAUAcuug -5'
28267 3' -44.5 NC_005902.1 + 169122 0.76 0.969723
Target:  5'- aACCcUUUAACACCUAAGCUAUa--- -3'
miRNA:   3'- gUGGaAAAUUGUGGGUUCGAUAcuug -5'
28267 3' -44.5 NC_005902.1 + 60465 0.76 0.969723
Target:  5'- aACCcUUUAACACCUAAGCUAUa--- -3'
miRNA:   3'- gUGGaAAAUUGUGGGUUCGAUAcuug -5'
28267 3' -44.5 NC_005902.1 + 23255 0.76 0.969723
Target:  5'- aACCcUUUAACACCUAAGCUAUa--- -3'
miRNA:   3'- gUGGaAAAUUGUGGGUUCGAUAcuug -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.