miRNA display CGI


Results 41 - 60 of 226 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28267 3' -44.5 NC_005902.1 + 54869 0.75 0.980684
Target:  5'- aACCcUUUAACACCUAAGCUAUu-ACu -3'
miRNA:   3'- gUGGaAAAUUGUGGGUUCGAUAcuUG- -5'
28267 3' -44.5 NC_005902.1 + 165943 0.79 0.924607
Target:  5'- aCACCUUUUAAUACUUAAGCUAUa--- -3'
miRNA:   3'- -GUGGAAAAUUGUGGGUUCGAUAcuug -5'
28267 3' -44.5 NC_005902.1 + 137431 0.83 0.745954
Target:  5'- uCACCUUUUAACAUCUAAGCUAUacACu -3'
miRNA:   3'- -GUGGAAAAUUGUGGGUUCGAUAcuUG- -5'
28267 3' -44.5 NC_005902.1 + 39086 0.75 0.980684
Target:  5'- uUACCUuuuaacucUUUAACACCUAAGCUAUauACa -3'
miRNA:   3'- -GUGGA--------AAAUUGUGGGUUCGAUAcuUG- -5'
28267 3' -44.5 NC_005902.1 + 45076 0.87 0.570363
Target:  5'- uUACCUUUUAACACCUAAGCUAUauACu -3'
miRNA:   3'- -GUGGAAAAUUGUGGGUUCGAUAcuUG- -5'
28267 3' -44.5 NC_005902.1 + 149799 0.71 0.999096
Target:  5'- ---aUUUUAACACCUAAGUUAUGuACu -3'
miRNA:   3'- guggAAAAUUGUGGGUUCGAUACuUG- -5'
28267 3' -44.5 NC_005902.1 + 52771 0.82 0.795867
Target:  5'- aACCUUUUAACACCUAAGUUauauaaaGUGAAUg -3'
miRNA:   3'- gUGGAAAAUUGUGGGUUCGA-------UACUUG- -5'
28267 3' -44.5 NC_005902.1 + 3073 0.71 0.998887
Target:  5'- aACgaUUUAACACCUAAGCUAUa--- -3'
miRNA:   3'- gUGgaAAAUUGUGGGUUCGAUAcuug -5'
28267 3' -44.5 NC_005902.1 + 136567 0.72 0.998341
Target:  5'- aACCcUUUAACACCUAAGUUAUauACu -3'
miRNA:   3'- gUGGaAAAUUGUGGGUUCGAUAcuUG- -5'
28267 3' -44.5 NC_005902.1 + 61619 0.73 0.99711
Target:  5'- aACCcUUUAACAUCUAAGCUAUauACa -3'
miRNA:   3'- gUGGaAAAUUGUGGGUUCGAUAcuUG- -5'
28267 3' -44.5 NC_005902.1 + 80733 0.74 0.989855
Target:  5'- aACUcUUUAACACCUAAGCUAUauACa -3'
miRNA:   3'- gUGGaAAAUUGUGGGUUCGAUAcuUG- -5'
28267 3' -44.5 NC_005902.1 + 85053 0.75 0.988369
Target:  5'- aGCUUUUUAACAUCUAGGCUAUauACu -3'
miRNA:   3'- gUGGAAAAUUGUGGGUUCGAUAcuUG- -5'
28267 3' -44.5 NC_005902.1 + 71207 0.75 0.98672
Target:  5'- aACCUUUUAAUGCUUAAGCUAUauACa -3'
miRNA:   3'- gUGGAAAAUUGUGGGUUCGAUAcuUG- -5'
28267 3' -44.5 NC_005902.1 + 46933 0.76 0.972804
Target:  5'- aACCUgUUAAUACCUAAGCUAUauGCa -3'
miRNA:   3'- gUGGAaAAUUGUGGGUUCGAUAcuUG- -5'
28267 3' -44.5 NC_005902.1 + 13181 0.76 0.969723
Target:  5'- aACCcUUUAACACCUAAGCUAUa--- -3'
miRNA:   3'- gUGGaAAAUUGUGGGUUCGAUAcuug -5'
28267 3' -44.5 NC_005902.1 + 40965 0.77 0.962828
Target:  5'- uCACCcUUUAAUACCUAAGCUAUauACa -3'
miRNA:   3'- -GUGGaAAAUUGUGGGUUCGAUAcuUG- -5'
28267 3' -44.5 NC_005902.1 + 91856 0.78 0.930357
Target:  5'- aACCcUUUAACACCUAAGCUAUauACa -3'
miRNA:   3'- gUGGaAAAUUGUGGGUUCGAUAcuUG- -5'
28267 3' -44.5 NC_005902.1 + 54048 0.79 0.905669
Target:  5'- aUAUCcUUUAACACCUAAGCUAuauaUGAACa -3'
miRNA:   3'- -GUGGaAAAUUGUGGGUUCGAU----ACUUG- -5'
28267 3' -44.5 NC_005902.1 + 95761 0.8 0.884245
Target:  5'- aUACCUUUUAACACUUAAGCUAUa--- -3'
miRNA:   3'- -GUGGAAAAUUGUGGGUUCGAUAcuug -5'
28267 3' -44.5 NC_005902.1 + 116630 0.82 0.825368
Target:  5'- aACUUUUUAACACCUAAGCUAUauACa -3'
miRNA:   3'- gUGGAAAAUUGUGGGUUCGAUAcuUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.