miRNA display CGI


Results 41 - 60 of 226 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28267 3' -44.5 NC_005902.1 + 37766 0.75 0.98672
Target:  5'- uUAUCUUUUAACACCUAAGCUu---GCu -3'
miRNA:   3'- -GUGGAAAAUUGUGGGUUCGAuacuUG- -5'
28267 3' -44.5 NC_005902.1 + 39086 0.75 0.980684
Target:  5'- uUACCUuuuaacucUUUAACACCUAAGCUAUauACa -3'
miRNA:   3'- -GUGGA--------AAAUUGUGGGUUCGAUAcuUG- -5'
28267 3' -44.5 NC_005902.1 + 40064 0.74 0.991188
Target:  5'- aACCcUUUAACACUUAAGCUAuauaUGAAUg -3'
miRNA:   3'- gUGGaAAAUUGUGGGUUCGAU----ACUUG- -5'
28267 3' -44.5 NC_005902.1 + 40965 0.77 0.962828
Target:  5'- uCACCcUUUAAUACCUAAGCUAUauACa -3'
miRNA:   3'- -GUGGaAAAUUGUGGGUUCGAUAcuUG- -5'
28267 3' -44.5 NC_005902.1 + 41021 0.71 0.999096
Target:  5'- aAUCUUUUAAUACUUAAGCUAUauACa -3'
miRNA:   3'- gUGGAAAAUUGUGGGUUCGAUAcuUG- -5'
28267 3' -44.5 NC_005902.1 + 41980 0.68 0.999984
Target:  5'- aAUUgUUUAACACCUAAGCUAUauACu -3'
miRNA:   3'- gUGGaAAAUUGUGGGUUCGAUAcuUG- -5'
28267 3' -44.5 NC_005902.1 + 42236 0.8 0.891657
Target:  5'- aACCUcUUAACACCUAAGCUAUauACa -3'
miRNA:   3'- gUGGAaAAUUGUGGGUUCGAUAcuUG- -5'
28267 3' -44.5 NC_005902.1 + 42975 0.71 0.999271
Target:  5'- uUACCcUUUAACAUCUAAGCUAUa--- -3'
miRNA:   3'- -GUGGaAAAUUGUGGGUUCGAUAcuug -5'
28267 3' -44.5 NC_005902.1 + 43524 0.71 0.999535
Target:  5'- aACCUUUUAACAUCUAAcCUAuauacaaaUGAGCa -3'
miRNA:   3'- gUGGAAAAUUGUGGGUUcGAU--------ACUUG- -5'
28267 3' -44.5 NC_005902.1 + 44012 0.88 0.505738
Target:  5'- aUACCUUUUAACACCUAAGCUAUauACa -3'
miRNA:   3'- -GUGGAAAAUUGUGGGUUCGAUAcuUG- -5'
28267 3' -44.5 NC_005902.1 + 45076 0.87 0.570363
Target:  5'- uUACCUUUUAACACCUAAGCUAUauACu -3'
miRNA:   3'- -GUGGAAAAUUGUGGGUUCGAUAcuUG- -5'
28267 3' -44.5 NC_005902.1 + 46933 0.76 0.972804
Target:  5'- aACCUgUUAAUACCUAAGCUAUauGCa -3'
miRNA:   3'- gUGGAaAAUUGUGGGUUCGAUAcuUG- -5'
28267 3' -44.5 NC_005902.1 + 47183 0.7 0.999827
Target:  5'- aACC-UUUAACACUUAAGCUAUauACu -3'
miRNA:   3'- gUGGaAAAUUGUGGGUUCGAUAcuUG- -5'
28267 3' -44.5 NC_005902.1 + 47234 0.78 0.930357
Target:  5'- aACCcUUUAACACCUAAGCUAUauACa -3'
miRNA:   3'- gUGGaAAAUUGUGGGUUCGAUAcuUG- -5'
28267 3' -44.5 NC_005902.1 + 48108 0.71 0.999416
Target:  5'- uUACCcUUUAACAUUUAAGCUAuauacaaaUGAGCa -3'
miRNA:   3'- -GUGGaAAAUUGUGGGUUCGAU--------ACUUG- -5'
28267 3' -44.5 NC_005902.1 + 48378 0.79 0.918575
Target:  5'- aACCcUUUAACACCUAAGUUAUGuACu -3'
miRNA:   3'- gUGGaAAAUUGUGGGUUCGAUACuUG- -5'
28267 3' -44.5 NC_005902.1 + 49432 0.83 0.776937
Target:  5'- aUACCUUUUAACACCUAAGUUAUaaauagGGGCa -3'
miRNA:   3'- -GUGGAAAAUUGUGGGUUCGAUA------CUUG- -5'
28267 3' -44.5 NC_005902.1 + 49950 0.68 0.999958
Target:  5'- aUACCcUUUAACuCCUAAGCUAUauACa -3'
miRNA:   3'- -GUGGaAAAUUGuGGGUUCGAUAcuUG- -5'
28267 3' -44.5 NC_005902.1 + 50041 0.82 0.816055
Target:  5'- uUACCcUUUAACACCUAAGCUAUGuuCa -3'
miRNA:   3'- -GUGGaAAAUUGUGGGUUCGAUACuuG- -5'
28267 3' -44.5 NC_005902.1 + 50105 0.66 0.999998
Target:  5'- -cCCUUUgauccUAACACCUAAGCUAc---- -3'
miRNA:   3'- guGGAAA-----AUUGUGGGUUCGAUacuug -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.