miRNA display CGI


Results 21 - 40 of 226 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28267 3' -44.5 NC_005902.1 + 23255 0.76 0.969723
Target:  5'- aACCcUUUAACACCUAAGCUAUa--- -3'
miRNA:   3'- gUGGaAAAUUGUGGGUUCGAUAcuug -5'
28267 3' -44.5 NC_005902.1 + 23286 0.7 0.999633
Target:  5'- aAUCcUUUAAUACCUAAGCUAuauaUGAAUg -3'
miRNA:   3'- gUGGaAAAUUGUGGGUUCGAU----ACUUG- -5'
28267 3' -44.5 NC_005902.1 + 23414 0.72 0.998637
Target:  5'- -----gUUAACACCCAAGCUAUauACa -3'
miRNA:   3'- guggaaAAUUGUGGGUUCGAUAcuUG- -5'
28267 3' -44.5 NC_005902.1 + 23605 0.75 0.98672
Target:  5'- uUACUcUUUAACACCUAAGCUAUacACa -3'
miRNA:   3'- -GUGGaAAAUUGUGGGUUCGAUAcuUG- -5'
28267 3' -44.5 NC_005902.1 + 28151 0.8 0.876569
Target:  5'- uUAUCUUUUAACACCUAAGCUAUa--- -3'
miRNA:   3'- -GUGGAAAAUUGUGGGUUCGAUAcuug -5'
28267 3' -44.5 NC_005902.1 + 28970 0.7 0.999633
Target:  5'- aGCUUaggugUUAACACCUAAGCUAUacACa -3'
miRNA:   3'- gUGGAa----AAUUGUGGGUUCGAUAcuUG- -5'
28267 3' -44.5 NC_005902.1 + 29211 0.8 0.868636
Target:  5'- aACUcUUUAACACCUAAGCUAuauaUGAACa -3'
miRNA:   3'- gUGGaAAAUUGUGGGUUCGAU----ACUUG- -5'
28267 3' -44.5 NC_005902.1 + 29567 0.75 0.988369
Target:  5'- aACUUUUUAAUAUCCAAGCUAUa--- -3'
miRNA:   3'- gUGGAAAAUUGUGGGUUCGAUAcuug -5'
28267 3' -44.5 NC_005902.1 + 29607 0.66 0.999999
Target:  5'- uUACCcUUUAACAUUUAAGCUAUauACu -3'
miRNA:   3'- -GUGGaAAAUUGUGGGUUCGAUAcuUG- -5'
28267 3' -44.5 NC_005902.1 + 30796 0.73 0.99711
Target:  5'- aACCcUUUAACAUCUAAGCUAUauACg -3'
miRNA:   3'- gUGGaAAAUUGUGGGUUCGAUAcuUG- -5'
28267 3' -44.5 NC_005902.1 + 31085 1.12 0.028204
Target:  5'- uCACCUUUUAACACCCAAGCUAUGAACa -3'
miRNA:   3'- -GUGGAAAAUUGUGGGUUCGAUACUUG- -5'
28267 3' -44.5 NC_005902.1 + 31414 0.75 0.988369
Target:  5'- uUACCcUUUAAUACCUAAGCUAUauACa -3'
miRNA:   3'- -GUGGaAAAUUGUGGGUUCGAUAcuUG- -5'
28267 3' -44.5 NC_005902.1 + 32792 0.66 0.999999
Target:  5'- aACCUUUUAA-ACCCAaauguauuguuGGCUAUGcauuuGCa -3'
miRNA:   3'- gUGGAAAAUUgUGGGU-----------UCGAUACu----UG- -5'
28267 3' -44.5 NC_005902.1 + 34431 0.67 0.999997
Target:  5'- aACCUUacuuugAACACCCGGGauggGAACc -3'
miRNA:   3'- gUGGAAaa----UUGUGGGUUCgauaCUUG- -5'
28267 3' -44.5 NC_005902.1 + 34813 0.72 0.998341
Target:  5'- aACCcUUUAACACCUAAGUUAUauACu -3'
miRNA:   3'- gUGGaAAAUUGUGGGUUCGAUAcuUG- -5'
28267 3' -44.5 NC_005902.1 + 36095 0.74 0.992379
Target:  5'- aACCcUUUAACACCUAAGgUGUGGu- -3'
miRNA:   3'- gUGGaAAAUUGUGGGUUCgAUACUug -5'
28267 3' -44.5 NC_005902.1 + 36162 0.75 0.988369
Target:  5'- -cCCUUUUAACAUCUAAGCUAUa--- -3'
miRNA:   3'- guGGAAAAUUGUGGGUUCGAUAcuug -5'
28267 3' -44.5 NC_005902.1 + 36798 0.81 0.834474
Target:  5'- aACCUUUUAACACUUAAGCUAUacACa -3'
miRNA:   3'- gUGGAAAAUUGUGGGUUCGAUAcuUG- -5'
28267 3' -44.5 NC_005902.1 + 36900 0.74 0.993438
Target:  5'- aGCCUUUUAACuCCUAAGgCUaguauaGUGAGCa -3'
miRNA:   3'- gUGGAAAAUUGuGGGUUC-GA------UACUUG- -5'
28267 3' -44.5 NC_005902.1 + 37252 0.66 0.999999
Target:  5'- aACUUUaucUUAACACUUAAGCUAUauACa -3'
miRNA:   3'- gUGGAA---AAUUGUGGGUUCGAUAcuUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.