miRNA display CGI


Results 21 - 40 of 226 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28267 3' -44.5 NC_005902.1 + 166125 0.68 0.999958
Target:  5'- aUACCcUUUAAUACUUAAGCUAUauACa -3'
miRNA:   3'- -GUGGaAAAUUGUGGGUUCGAUAcuUG- -5'
28267 3' -44.5 NC_005902.1 + 165943 0.79 0.924607
Target:  5'- aCACCUUUUAAUACUUAAGCUAUa--- -3'
miRNA:   3'- -GUGGAAAAUUGUGGGUUCGAUAcuug -5'
28267 3' -44.5 NC_005902.1 + 165885 0.79 0.912262
Target:  5'- aUACCcUUUAACACCUAAGCUAUauACg -3'
miRNA:   3'- -GUGGaAAAUUGUGGGUUCGAUAcuUG- -5'
28267 3' -44.5 NC_005902.1 + 165714 0.72 0.997585
Target:  5'- uUAUCUaUUAACACCUAAGCUAUa--- -3'
miRNA:   3'- -GUGGAaAAUUGUGGGUUCGAUAcuug -5'
28267 3' -44.5 NC_005902.1 + 163494 0.71 0.998864
Target:  5'- aGCCUUaggauuuaaaggaUUAACAUCUAAGCUAUaAACa -3'
miRNA:   3'- gUGGAA-------------AAUUGUGGGUUCGAUAcUUG- -5'
28267 3' -44.5 NC_005902.1 + 163387 0.79 0.924607
Target:  5'- -cCCUUUUAACAUCUAAGCUAuauaUGAAUg -3'
miRNA:   3'- guGGAAAAUUGUGGGUUCGAU----ACUUG- -5'
28267 3' -44.5 NC_005902.1 + 162533 0.72 0.997993
Target:  5'- aACCcUUUAACACUUAAGCUAUauACa -3'
miRNA:   3'- gUGGaAAAUUGUGGGUUCGAUAcuUG- -5'
28267 3' -44.5 NC_005902.1 + 162389 0.68 0.999984
Target:  5'- -uCCcUUUAACACCUAAGCUAc---- -3'
miRNA:   3'- guGGaAAAUUGUGGGUUCGAUacuug -5'
28267 3' -44.5 NC_005902.1 + 159739 0.81 0.843363
Target:  5'- aAUCUUUUAAUACCUAAGCUAuauauaaaUGAGCg -3'
miRNA:   3'- gUGGAAAAUUGUGGGUUCGAU--------ACUUG- -5'
28267 3' -44.5 NC_005902.1 + 158227 0.72 0.998341
Target:  5'- aACCcUUUAAUGCCUAAGCUAUauACa -3'
miRNA:   3'- gUGGaAAAUUGUGGGUUCGAUAcuUG- -5'
28267 3' -44.5 NC_005902.1 + 158118 0.68 0.999984
Target:  5'- aACCcUUUAAUACUUAAGCUAUauACa -3'
miRNA:   3'- gUGGaAAAUUGUGGGUUCGAUAcuUG- -5'
28267 3' -44.5 NC_005902.1 + 158076 0.66 0.999999
Target:  5'- aACCcUUUAAUACCUAcAG-UGUGAACa -3'
miRNA:   3'- gUGGaAAAUUGUGGGU-UCgAUACUUG- -5'
28267 3' -44.5 NC_005902.1 + 157841 0.67 0.999994
Target:  5'- aACUUuucaauaUUUAACACCUAAGCUAUa--- -3'
miRNA:   3'- gUGGA-------AAAUUGUGGGUUCGAUAcuug -5'
28267 3' -44.5 NC_005902.1 + 157227 0.8 0.891657
Target:  5'- aACCcUUUAACACCUAAGCUAUauacaaaaGAGCa -3'
miRNA:   3'- gUGGaAAAUUGUGGGUUCGAUA--------CUUG- -5'
28267 3' -44.5 NC_005902.1 + 157072 0.68 0.999958
Target:  5'- aGCUUaggugUUAACACCUAAGCUAU--ACa -3'
miRNA:   3'- gUGGAa----AAUUGUGGGUUCGAUAcuUG- -5'
28267 3' -44.5 NC_005902.1 + 156548 0.8 0.868636
Target:  5'- -cCCUUUUAACACCUAAGCUAUa--- -3'
miRNA:   3'- guGGAAAAUUGUGGGUUCGAUAcuug -5'
28267 3' -44.5 NC_005902.1 + 156429 0.88 0.537717
Target:  5'- aACCUUUUAACACCUAAGCUAUauACa -3'
miRNA:   3'- gUGGAAAAUUGUGGGUUCGAUAcuUG- -5'
28267 3' -44.5 NC_005902.1 + 156337 0.72 0.998341
Target:  5'- aACUUUUUAACAUUUAAGCUAuauaUGAAUa -3'
miRNA:   3'- gUGGAAAAUUGUGGGUUCGAU----ACUUG- -5'
28267 3' -44.5 NC_005902.1 + 155506 0.69 0.999924
Target:  5'- aACCUUUUcauUAUCCAugGGCUGUGGAa -3'
miRNA:   3'- gUGGAAAAuu-GUGGGU--UCGAUACUUg -5'
28267 3' -44.5 NC_005902.1 + 155211 0.73 0.99711
Target:  5'- aACCcUUUAACAUCUAAGCUAUauACa -3'
miRNA:   3'- gUGGaAAAUUGUGGGUUCGAUAcuUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.