miRNA display CGI


Results 21 - 40 of 226 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28267 3' -44.5 NC_005902.1 + 159739 0.81 0.843363
Target:  5'- aAUCUUUUAAUACCUAAGCUAuauauaaaUGAGCg -3'
miRNA:   3'- gUGGAAAAUUGUGGGUUCGAU--------ACUUG- -5'
28267 3' -44.5 NC_005902.1 + 131663 0.81 0.843363
Target:  5'- aACCcUUUAACACCUAAGCUAuacauacacaaaUGAGCa -3'
miRNA:   3'- gUGGaAAAUUGUGGGUUCGAU------------ACUUG- -5'
28267 3' -44.5 NC_005902.1 + 156548 0.8 0.868636
Target:  5'- -cCCUUUUAACACCUAAGCUAUa--- -3'
miRNA:   3'- guGGAAAAUUGUGGGUUCGAUAcuug -5'
28267 3' -44.5 NC_005902.1 + 97174 0.8 0.868636
Target:  5'- aACCcUUUAACACCUAAGCUAuauaUGAAUg -3'
miRNA:   3'- gUGGaAAAUUGUGGGUUCGAU----ACUUG- -5'
28267 3' -44.5 NC_005902.1 + 69181 0.8 0.868636
Target:  5'- aACCcUUUAACAUCUAAGCUAuaUGAACa -3'
miRNA:   3'- gUGGaAAAUUGUGGGUUCGAU--ACUUG- -5'
28267 3' -44.5 NC_005902.1 + 29211 0.8 0.868636
Target:  5'- aACUcUUUAACACCUAAGCUAuauaUGAACa -3'
miRNA:   3'- gUGGaAAAUUGUGGGUUCGAU----ACUUG- -5'
28267 3' -44.5 NC_005902.1 + 28151 0.8 0.876569
Target:  5'- uUAUCUUUUAACACCUAAGCUAUa--- -3'
miRNA:   3'- -GUGGAAAAUUGUGGGUUCGAUAcuug -5'
28267 3' -44.5 NC_005902.1 + 118292 0.8 0.876569
Target:  5'- aACCUUUUAACACUUAAGCUAUauACu -3'
miRNA:   3'- gUGGAAAAUUGUGGGUUCGAUAcuUG- -5'
28267 3' -44.5 NC_005902.1 + 95761 0.8 0.884245
Target:  5'- aUACCUUUUAACACUUAAGCUAUa--- -3'
miRNA:   3'- -GUGGAAAAUUGUGGGUUCGAUAcuug -5'
28267 3' -44.5 NC_005902.1 + 157227 0.8 0.891657
Target:  5'- aACCcUUUAACACCUAAGCUAUauacaaaaGAGCa -3'
miRNA:   3'- gUGGaAAAUUGUGGGUUCGAUA--------CUUG- -5'
28267 3' -44.5 NC_005902.1 + 182558 0.8 0.891657
Target:  5'- cCACUcgaUUUUAACACCUAAGCUAuauacaaaUGAGCa -3'
miRNA:   3'- -GUGG---AAAAUUGUGGGUUCGAU--------ACUUG- -5'
28267 3' -44.5 NC_005902.1 + 42236 0.8 0.891657
Target:  5'- aACCUcUUAACACCUAAGCUAUauACa -3'
miRNA:   3'- gUGGAaAAUUGUGGGUUCGAUAcuUG- -5'
28267 3' -44.5 NC_005902.1 + 137772 0.8 0.8988
Target:  5'- aACUUUUUAACACCUAAGCUAUa--- -3'
miRNA:   3'- gUGGAAAAUUGUGGGUUCGAUAcuug -5'
28267 3' -44.5 NC_005902.1 + 54048 0.79 0.905669
Target:  5'- aUAUCcUUUAACACCUAAGCUAuauaUGAACa -3'
miRNA:   3'- -GUGGaAAAUUGUGGGUUCGAU----ACUUG- -5'
28267 3' -44.5 NC_005902.1 + 165885 0.79 0.912262
Target:  5'- aUACCcUUUAACACCUAAGCUAUauACg -3'
miRNA:   3'- -GUGGaAAAUUGUGGGUUCGAUAcuUG- -5'
28267 3' -44.5 NC_005902.1 + 86388 0.79 0.918575
Target:  5'- aUACUcUUUAACACCUAAGCUauauacaaGUGAGCa -3'
miRNA:   3'- -GUGGaAAAUUGUGGGUUCGA--------UACUUG- -5'
28267 3' -44.5 NC_005902.1 + 48378 0.79 0.918575
Target:  5'- aACCcUUUAACACCUAAGUUAUGuACu -3'
miRNA:   3'- gUGGaAAAUUGUGGGUUCGAUACuUG- -5'
28267 3' -44.5 NC_005902.1 + 163387 0.79 0.924607
Target:  5'- -cCCUUUUAACAUCUAAGCUAuauaUGAAUg -3'
miRNA:   3'- guGGAAAAUUGUGGGUUCGAU----ACUUG- -5'
28267 3' -44.5 NC_005902.1 + 165943 0.79 0.924607
Target:  5'- aCACCUUUUAAUACUUAAGCUAUa--- -3'
miRNA:   3'- -GUGGAAAAUUGUGGGUUCGAUAcuug -5'
28267 3' -44.5 NC_005902.1 + 47234 0.78 0.930357
Target:  5'- aACCcUUUAACACCUAAGCUAUauACa -3'
miRNA:   3'- gUGGaAAAUUGUGGGUUCGAUAcuUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.