Results 21 - 40 of 226 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28267 | 3' | -44.5 | NC_005902.1 | + | 159739 | 0.81 | 0.843363 |
Target: 5'- aAUCUUUUAAUACCUAAGCUAuauauaaaUGAGCg -3' miRNA: 3'- gUGGAAAAUUGUGGGUUCGAU--------ACUUG- -5' |
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28267 | 3' | -44.5 | NC_005902.1 | + | 131663 | 0.81 | 0.843363 |
Target: 5'- aACCcUUUAACACCUAAGCUAuacauacacaaaUGAGCa -3' miRNA: 3'- gUGGaAAAUUGUGGGUUCGAU------------ACUUG- -5' |
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28267 | 3' | -44.5 | NC_005902.1 | + | 156548 | 0.8 | 0.868636 |
Target: 5'- -cCCUUUUAACACCUAAGCUAUa--- -3' miRNA: 3'- guGGAAAAUUGUGGGUUCGAUAcuug -5' |
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28267 | 3' | -44.5 | NC_005902.1 | + | 97174 | 0.8 | 0.868636 |
Target: 5'- aACCcUUUAACACCUAAGCUAuauaUGAAUg -3' miRNA: 3'- gUGGaAAAUUGUGGGUUCGAU----ACUUG- -5' |
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28267 | 3' | -44.5 | NC_005902.1 | + | 69181 | 0.8 | 0.868636 |
Target: 5'- aACCcUUUAACAUCUAAGCUAuaUGAACa -3' miRNA: 3'- gUGGaAAAUUGUGGGUUCGAU--ACUUG- -5' |
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28267 | 3' | -44.5 | NC_005902.1 | + | 29211 | 0.8 | 0.868636 |
Target: 5'- aACUcUUUAACACCUAAGCUAuauaUGAACa -3' miRNA: 3'- gUGGaAAAUUGUGGGUUCGAU----ACUUG- -5' |
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28267 | 3' | -44.5 | NC_005902.1 | + | 28151 | 0.8 | 0.876569 |
Target: 5'- uUAUCUUUUAACACCUAAGCUAUa--- -3' miRNA: 3'- -GUGGAAAAUUGUGGGUUCGAUAcuug -5' |
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28267 | 3' | -44.5 | NC_005902.1 | + | 118292 | 0.8 | 0.876569 |
Target: 5'- aACCUUUUAACACUUAAGCUAUauACu -3' miRNA: 3'- gUGGAAAAUUGUGGGUUCGAUAcuUG- -5' |
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28267 | 3' | -44.5 | NC_005902.1 | + | 95761 | 0.8 | 0.884245 |
Target: 5'- aUACCUUUUAACACUUAAGCUAUa--- -3' miRNA: 3'- -GUGGAAAAUUGUGGGUUCGAUAcuug -5' |
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28267 | 3' | -44.5 | NC_005902.1 | + | 157227 | 0.8 | 0.891657 |
Target: 5'- aACCcUUUAACACCUAAGCUAUauacaaaaGAGCa -3' miRNA: 3'- gUGGaAAAUUGUGGGUUCGAUA--------CUUG- -5' |
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28267 | 3' | -44.5 | NC_005902.1 | + | 182558 | 0.8 | 0.891657 |
Target: 5'- cCACUcgaUUUUAACACCUAAGCUAuauacaaaUGAGCa -3' miRNA: 3'- -GUGG---AAAAUUGUGGGUUCGAU--------ACUUG- -5' |
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28267 | 3' | -44.5 | NC_005902.1 | + | 42236 | 0.8 | 0.891657 |
Target: 5'- aACCUcUUAACACCUAAGCUAUauACa -3' miRNA: 3'- gUGGAaAAUUGUGGGUUCGAUAcuUG- -5' |
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28267 | 3' | -44.5 | NC_005902.1 | + | 137772 | 0.8 | 0.8988 |
Target: 5'- aACUUUUUAACACCUAAGCUAUa--- -3' miRNA: 3'- gUGGAAAAUUGUGGGUUCGAUAcuug -5' |
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28267 | 3' | -44.5 | NC_005902.1 | + | 54048 | 0.79 | 0.905669 |
Target: 5'- aUAUCcUUUAACACCUAAGCUAuauaUGAACa -3' miRNA: 3'- -GUGGaAAAUUGUGGGUUCGAU----ACUUG- -5' |
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28267 | 3' | -44.5 | NC_005902.1 | + | 165885 | 0.79 | 0.912262 |
Target: 5'- aUACCcUUUAACACCUAAGCUAUauACg -3' miRNA: 3'- -GUGGaAAAUUGUGGGUUCGAUAcuUG- -5' |
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28267 | 3' | -44.5 | NC_005902.1 | + | 86388 | 0.79 | 0.918575 |
Target: 5'- aUACUcUUUAACACCUAAGCUauauacaaGUGAGCa -3' miRNA: 3'- -GUGGaAAAUUGUGGGUUCGA--------UACUUG- -5' |
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28267 | 3' | -44.5 | NC_005902.1 | + | 48378 | 0.79 | 0.918575 |
Target: 5'- aACCcUUUAACACCUAAGUUAUGuACu -3' miRNA: 3'- gUGGaAAAUUGUGGGUUCGAUACuUG- -5' |
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28267 | 3' | -44.5 | NC_005902.1 | + | 163387 | 0.79 | 0.924607 |
Target: 5'- -cCCUUUUAACAUCUAAGCUAuauaUGAAUg -3' miRNA: 3'- guGGAAAAUUGUGGGUUCGAU----ACUUG- -5' |
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28267 | 3' | -44.5 | NC_005902.1 | + | 165943 | 0.79 | 0.924607 |
Target: 5'- aCACCUUUUAAUACUUAAGCUAUa--- -3' miRNA: 3'- -GUGGAAAAUUGUGGGUUCGAUAcuug -5' |
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28267 | 3' | -44.5 | NC_005902.1 | + | 47234 | 0.78 | 0.930357 |
Target: 5'- aACCcUUUAACACCUAAGCUAUauACa -3' miRNA: 3'- gUGGaAAAUUGUGGGUUCGAUAcuUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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