miRNA display CGI


Results 21 - 40 of 226 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28267 3' -44.5 NC_005902.1 + 90057 0.66 0.999998
Target:  5'- aACCc-UUAACACCUAAGUUAUauACa -3'
miRNA:   3'- gUGGaaAAUUGUGGGUUCGAUAcuUG- -5'
28267 3' -44.5 NC_005902.1 + 34431 0.67 0.999997
Target:  5'- aACCUUacuuugAACACCCGGGauggGAACc -3'
miRNA:   3'- gUGGAAaa----UUGUGGGUUCgauaCUUG- -5'
28267 3' -44.5 NC_005902.1 + 100667 0.67 0.999997
Target:  5'- uUACCcUUUAAUAUCUAAGCUAUa--- -3'
miRNA:   3'- -GUGGaAAAUUGUGGGUUCGAUAcuug -5'
28267 3' -44.5 NC_005902.1 + 130880 0.67 0.999997
Target:  5'- uUACCcUUUAACuCUCAAGCUAUauACa -3'
miRNA:   3'- -GUGGaAAAUUGuGGGUUCGAUAcuUG- -5'
28267 3' -44.5 NC_005902.1 + 136044 0.67 0.999997
Target:  5'- aACCcUUUAACuCCUAAGCUAUauACu -3'
miRNA:   3'- gUGGaAAAUUGuGGGUUCGAUAcuUG- -5'
28267 3' -44.5 NC_005902.1 + 149099 0.67 0.999996
Target:  5'- uUACCUUUUAAC-UCCAGGCUu---ACu -3'
miRNA:   3'- -GUGGAAAAUUGuGGGUUCGAuacuUG- -5'
28267 3' -44.5 NC_005902.1 + 133832 0.67 0.999996
Target:  5'- uCACCcUUUAACACCUAAGUg------ -3'
miRNA:   3'- -GUGGaAAAUUGUGGGUUCGauacuug -5'
28267 3' -44.5 NC_005902.1 + 184734 0.67 0.999996
Target:  5'- aCACCUUaggaauuaauccUAACACCUGAGCUAUa--- -3'
miRNA:   3'- -GUGGAAa-----------AUUGUGGGUUCGAUAcuug -5'
28267 3' -44.5 NC_005902.1 + 134576 0.67 0.999994
Target:  5'- uUACCcUUUAACAUUUAAGCUAUauACa -3'
miRNA:   3'- -GUGGaAAAUUGUGGGUUCGAUAcuUG- -5'
28267 3' -44.5 NC_005902.1 + 63234 0.67 0.999994
Target:  5'- uUACCcUUUAACcCCUAAGCUAUauACu -3'
miRNA:   3'- -GUGGaAAAUUGuGGGUUCGAUAcuUG- -5'
28267 3' -44.5 NC_005902.1 + 157841 0.67 0.999994
Target:  5'- aACUUuucaauaUUUAACACCUAAGCUAUa--- -3'
miRNA:   3'- gUGGA-------AAAUUGUGGGUUCGAUAcuug -5'
28267 3' -44.5 NC_005902.1 + 107135 0.67 0.999994
Target:  5'- aACCUUUUAucCACCCucuAAGCUAUa--- -3'
miRNA:   3'- gUGGAAAAUu-GUGGG---UUCGAUAcuug -5'
28267 3' -44.5 NC_005902.1 + 91306 0.67 0.999994
Target:  5'- aUACCUUUUAACACUUAAaCUAUauACg -3'
miRNA:   3'- -GUGGAAAAUUGUGGGUUcGAUAcuUG- -5'
28267 3' -44.5 NC_005902.1 + 92006 0.67 0.999994
Target:  5'- aACUUUUUaAAUACCUAAGCUAuauaUGAGu -3'
miRNA:   3'- gUGGAAAA-UUGUGGGUUCGAU----ACUUg -5'
28267 3' -44.5 NC_005902.1 + 137495 0.67 0.999994
Target:  5'- aACCcUUUAAUACCUAAauuaUAUGAACa -3'
miRNA:   3'- gUGGaAAAUUGUGGGUUcg--AUACUUG- -5'
28267 3' -44.5 NC_005902.1 + 88298 0.67 0.999992
Target:  5'- -----aUUAACACCUAAGCUAUauGCa -3'
miRNA:   3'- guggaaAAUUGUGGGUUCGAUAcuUG- -5'
28267 3' -44.5 NC_005902.1 + 151286 0.67 0.999992
Target:  5'- aAUCU--UAACACCUAAGCUAUa--- -3'
miRNA:   3'- gUGGAaaAUUGUGGGUUCGAUAcuug -5'
28267 3' -44.5 NC_005902.1 + 119006 0.67 0.999992
Target:  5'- aUACCcUUUAACuCCUAAGCUAUauACu -3'
miRNA:   3'- -GUGGaAAAUUGuGGGUUCGAUAcuUG- -5'
28267 3' -44.5 NC_005902.1 + 107799 0.67 0.999992
Target:  5'- aACUcUUUAACAUCUAAGCUAUauACu -3'
miRNA:   3'- gUGGaAAAUUGUGGGUUCGAUAcuUG- -5'
28267 3' -44.5 NC_005902.1 + 100154 0.67 0.999992
Target:  5'- aACCUUUUuAUGCCUAAGUUAUauACa -3'
miRNA:   3'- gUGGAAAAuUGUGGGUUCGAUAcuUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.